{"header":{"message":"CarpetX: Write and read internal driver state\n","description":null,"timestamp":"2020-09-17T20:30:58Z","authors":[{"email":"schnetter@gmail.com","name":"Erik Schnetter"}]},"hash":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC","authors":[],"deps":{"hashes":[["6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC","CarpetX: Write and read internal driver state\n"],["AA",null],["EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC","CarpetX: Implement file reader\n"],["B7Y552HZXBV2PD22T7ZXGFJKUYU23A7XDWV4XZK46SGQKX7U45PQC","CarpetX: Don't \"using namespace amrex\"\n"],["2MTD37PDBF7KZKC6LXG2IVDYMMUMNNS557WMFVSCZM3SAKOGDC5QC","Make Silo output work\n"],["6D6MZBKTLXUK4ZCIFUPNV7XT64XSFFG4CL6HN6ONK5ONM6MR64AAC","CarpetX: Correct bugs in Silo output\n"]],"deps":["EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC"],"known":["2MTD37PDBF7KZKC6LXG2IVDYMMUMNNS557WMFVSCZM3SAKOGDC5QC","B7Y552HZXBV2PD22T7ZXGFJKUYU23A7XDWV4XZK46SGQKX7U45PQC"]},"hunks":[{"Edit":{"inode":{"change":2,"pos":27},"path":"CarpetX/par/brill-lindquist-read.par","line":5,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":88},"to":{"change":2,"start":88,"end":102},"introduced_by":2}],"inode":{"change":2,"pos":27}}},"contents":[{"Del":{"text":" Formaline","pos":"EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC:101"}}]}},{"Edit":{"inode":{"change":2,"pos":27},"path":"CarpetX/par/brill-lindquist-read.par","line":7,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":128}],"down_context":[{"change":2,"pos":128}],"flag":"BLOCK","start":0,"end":14,"inode":{"change":2,"pos":27}}},"contents":[{"Add":{"text":" TmunuBase","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:13"}}]}},{"Edit":{"inode":{"change":2,"pos":27},"path":"CarpetX/par/brill-lindquist-read.par","line":14,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":196}],"down_context":[{"change":2,"pos":196}],"flag":"BLOCK","start":15,"end":53,"inode":{"change":2,"pos":27}}},"contents":[{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:15"}},{"Add":{"text":"Cactus::presync_mode = \"mixed-error\"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:52"}}]}},{"Replacement":{"inode":{"change":2,"pos":27},"path":"CarpetX/par/brill-lindquist-read.par","line":63,"ins":{"up_context":[{"change":2,"pos":1169}],"down_context":[{"change":2,"pos":1273}],"flag":"BLOCK","start":54,"end":131,"inode":{"change":2,"pos":27}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":1169},"to":{"change":2,"start":1169,"end":1273},"introduced_by":2}],"inode":{"change":2,"pos":27}},"ins_contents":[{"Add":{"text":"CarpetX::in_dir = \"/home/eschnett/caliban-simulations/brill-lindquist-write\"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:130"}}],"del_contents":[{"Del":{"text":"CarpetX::in_dir = \"/Users/eschnett/simulations/brill-lindquist-write/output-0000/brill-lindquist-write\"","pos":"EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC:1272"}}]}},{"Edit":{"inode":{"change":2,"pos":1620},"path":"CarpetX/par/brill-lindquist-write.par","line":5,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":1681},"to":{"change":2,"start":1681,"end":1695},"introduced_by":2}],"inode":{"change":2,"pos":1620}}},"contents":[{"Del":{"text":" Formaline","pos":"EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC:1694"}}]}},{"Edit":{"inode":{"change":2,"pos":1620},"path":"CarpetX/par/brill-lindquist-write.par","line":7,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":1721}],"down_context":[{"change":2,"pos":1721}],"flag":"BLOCK","start":132,"end":146,"inode":{"change":2,"pos":1620}}},"contents":[{"Add":{"text":" TmunuBase","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:145"}}]}},{"Edit":{"inode":{"change":2,"pos":1620},"path":"CarpetX/par/brill-lindquist-write.par","line":14,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":1789}],"down_context":[{"change":2,"pos":1789}],"flag":"BLOCK","start":147,"end":185,"inode":{"change":2,"pos":1620}}},"contents":[{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:147"}},{"Add":{"text":"Cactus::presync_mode = \"mixed-error\"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:184"}}]}},{"Edit":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":103,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":2211}],"down_context":[{"change":3,"pos":2211}],"flag":"BLOCK","start":186,"end":406,"inode":{"change":3,"pos":38}}},"contents":[{"Add":{"text":" return DB::legalize_name(buf.str());","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:224"}},{"Add":{"text":"}","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:226"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:227"}},{"Add":{"text":"const string driver_name = \"CarpetX\";","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:265"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:266"}},{"Add":{"text":"string make_fabarraybasename(const int reflevel) {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:317"}},{"Add":{"text":" ostringstream buf;","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:338"}},{"Add":{"text":" buf << \"FabArrayBase.rl\" << setw(2) << setfill('0') << reflevel;","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:405"}}]}},{"Edit":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":119,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":8923}],"down_context":[{"change":2,"pos":8936}],"flag":"BLOCK","start":407,"end":420,"inode":{"change":3,"pos":38}}},"contents":[{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:407"}},{"Add":{"text":" int ierr;","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:419"}}]}},{"Edit":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":171,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":10422}],"down_context":[{"change":2,"pos":10422}],"flag":"BLOCK","start":421,"end":530,"inode":{"change":3,"pos":38}}},"contents":[{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:421"}},{"Add":{"text":" // TODO","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:431"}},{"Add":{"text":" // const string pathname = string(filereader_ID_dir);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:487"}},{"Add":{"text":" const string pathname = string(in_dir);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:529"}}]}},{"Edit":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":213,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":11435}],"down_context":[{"change":2,"pos":11435}],"flag":"BLOCK","start":531,"end":1676,"inode":{"change":3,"pos":38}}},"contents":[{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:531"}},{"Add":{"text":" static Timer timer_meta(\"InputSilo.meta\");","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:576"}},{"Add":{"text":" auto interval_meta = make_unique(timer_meta);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:634"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:635"}},{"Add":{"text":" // Read metadata","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:654"}},{"Add":{"text":" if (read_metafile) {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:677"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:678"}},{"Add":{"text":" const string metafilename =","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:710"}},{"Add":{"text":" pathname + \"/\" + make_filename(simulation_name, cctk_iteration);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:783"}},{"Add":{"text":" // We could use DB_UNKNOWN instead of DB_HDF5","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:833"}},{"Add":{"text":" const DB::ptr metafile =","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:870"}},{"Add":{"text":" DB::make(DBOpen(metafilename.c_str(), DB_HDF5, DB_READ));","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:936"}},{"Add":{"text":" assert(metafile);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:958"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:959"}},{"Add":{"text":" // Read internal driver state","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:993"}},{"Add":{"text":" // TODO: Only do this when recovering. But then, we should also do","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1064"}},{"Add":{"text":" // this as a file reader option!","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1101"}},{"Add":{"text":" {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1107"}},{"Add":{"text":" const string dirname = DB::legalize_name(driver_name);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1168"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1169"}},{"Add":{"text":" // Read number of levels","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1200"}},{"Add":{"text":" const int nlevels = [&] {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1232"}},{"Add":{"text":" const string varname = dirname + \"/\" + DB::legalize_name(\"nlevels\");","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1309"}},{"Add":{"text":" const int vartype = DBGetVarType(metafile.get(), varname.c_str());","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1384"}},{"Add":{"text":" assert(vartype == DB_INT);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1419"}},{"Add":{"text":" const int varlength = DBGetVarLength(metafile.get(), varname.c_str());","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1498"}},{"Add":{"text":" assert(varlength == 1);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1530"}},{"Add":{"text":" int result;","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1550"}},{"Add":{"text":" ierr = DBReadVar(metafile.get(), varname.c_str(), &result);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1618"}},{"Add":{"text":" assert(!ierr);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1641"}},{"Add":{"text":" return result;","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1664"}},{"Add":{"text":" }();","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1675"}}]}},{"Edit":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":246,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":11436}],"down_context":[{"change":2,"pos":11436}],"flag":"BLOCK","start":1677,"end":2866,"inode":{"change":3,"pos":38}}},"contents":[{"Add":{"text":" // Read FabArrayBase (component positions and shapes)","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1736"}},{"Add":{"text":" vector > boxes(nlevels);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1786"}},{"Add":{"text":" for (int level = 0; level < nlevels; ++level) {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1840"}},{"Add":{"text":" const string varname = dirname + \"/\" + make_fabarraybasename(level);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1917"}},{"Add":{"text":" const int vartype = DBGetVarType(metafile.get(), varname.c_str());","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:1992"}},{"Add":{"text":" assert(vartype == DB_INT);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2027"}},{"Add":{"text":" int vardims[2];","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2051"}},{"Add":{"text":" const int varndims =","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2080"}},{"Add":{"text":" DBGetVarDims(metafile.get(), varname.c_str(), 2, vardims);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2151"}},{"Add":{"text":" assert(varndims >= 0);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2182"}},{"Add":{"text":" assert(varndims == 2);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2213"}},{"Add":{"text":" assert(vardims[1] == 2 * ndims);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2254"}},{"Add":{"text":" const int nfabs = vardims[0];","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2292"}},{"Add":{"text":" assert(nfabs >= 0);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2320"}},{"Add":{"text":" vector data(2 * ndims * nfabs);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2365"}},{"Add":{"text":" ierr = DBReadVar(metafile.get(), varname.c_str(), data.data());","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2437"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2438"}},{"Add":{"text":" auto &levboxes = boxes.at(level);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2480"}},{"Add":{"text":" levboxes.resize(nfabs);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2512"}},{"Add":{"text":" assert(!ierr);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2535"}},{"Add":{"text":" for (int component = 0; component < nfabs; ++component) {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2601"}},{"Add":{"text":" const amrex::IntVect small(&data.at(2 * ndims * component));","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2672"}},{"Add":{"text":" const amrex::IntVect big(&data.at(ndims + 2 * ndims * component));","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2749"}},{"Add":{"text":" levboxes.at(component) = amrex::Box(small, big);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2808"}},{"Add":{"text":" }","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2818"}},{"Add":{"text":" }","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2826"}},{"Add":{"text":" }","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2832"}},{"Add":{"text":" }","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2836"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2837"}},{"Add":{"text":" interval_meta = nullptr;","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2864"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2865"}}]}},{"Edit":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":282,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":11559},"to":{"change":2,"start":11559,"end":11792},"introduced_by":2}],"inode":{"change":3,"pos":38}}},"contents":[{"Del":{"text":" const string subdirname = make_subdirname(simulation_name, cctk_iteration);","pos":"EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC:11638"}},{"Del":{"text":" // TODO","pos":"EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC:11650"}},{"Del":{"text":" // const string pathname = string(filereader_ID_dir) + \"/\" + subdirname;","pos":"EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC:11727"}},{"Del":{"text":" const string pathname = string(in_dir) + \"/\" + subdirname;","pos":"EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC:11790"}},{"Del":{"text":"","pos":"EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC:11791"}}]}},{"Edit":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":284,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":11839}],"down_context":[{"change":2,"pos":11839}],"flag":"BLOCK","start":2867,"end":2959,"inode":{"change":3,"pos":38}}},"contents":[{"Add":{"text":" const string subdirname =","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2898"}},{"Add":{"text":" make_subdirname(simulation_name, cctk_iteration);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:2958"}}]}},{"Replacement":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":287,"ins":{"up_context":[{"change":2,"pos":11869}],"down_context":[{"change":2,"pos":11896}],"flag":"BLOCK","start":2960,"end":3006,"inode":{"change":3,"pos":38}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":11869},"to":{"change":2,"start":11869,"end":11896},"introduced_by":2}],"inode":{"change":3,"pos":38}},"ins_contents":[{"Add":{"text":" pathname + \"/\" + subdirname + \"/\" +","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3005"}}],"del_contents":[{"Del":{"text":" pathname + \"/\" +","pos":"EJWFGXTWIBKJ62LO6QM62LM7MGTYEHOCZDKA3UVR5UYWQZ2O54DQC:11895"}}]}},{"Edit":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":1345,"atom":{"NewVertex":{"up_context":[{"change":6,"pos":18005}],"down_context":[{"change":6,"pos":18005}],"flag":"BLOCK","start":3007,"end":3042,"inode":{"change":3,"pos":38}}},"contents":[{"Add":{"text":" // Write internal driver state","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3041"}}]}},{"Edit":{"inode":{"change":3,"pos":38},"path":"CarpetX/src/io_silo.cxx","line":1347,"atom":{"NewVertex":{"up_context":[{"change":6,"pos":18011}],"down_context":[{"change":6,"pos":18011}],"flag":"BLOCK","start":3043,"end":4436,"inode":{"change":3,"pos":38}}},"contents":[{"Add":{"text":" const string dirname = DB::legalize_name(driver_name);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3103"}},{"Add":{"text":" ierr = DBMkDir(metafile.get(), dirname.c_str());","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3158"}},{"Add":{"text":" assert(!ierr);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3179"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3180"}},{"Add":{"text":" // Write number of levels","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3212"}},{"Add":{"text":" {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3220"}},{"Add":{"text":" const int dims = 1;","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3248"}},{"Add":{"text":" const int value = ghext->leveldata.size();","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3299"}},{"Add":{"text":" const string varname = dirname + \"/\" + DB::legalize_name(\"nlevels\");","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3376"}},{"Add":{"text":" ierr =","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3391"}},{"Add":{"text":" DBWrite(metafile.get(), varname.c_str(), &value, &dims, 1, DB_INT);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3471"}},{"Add":{"text":" assert(!ierr);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3494"}},{"Add":{"text":" }","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3502"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3503"}},{"Add":{"text":" // Write FabArrayBase (component positions and shapes)","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3564"}},{"Add":{"text":" for (const auto &leveldata : ghext->leveldata) {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3619"}},{"Add":{"text":" const amrex::FabArrayBase &fab = *leveldata.fab;","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3676"}},{"Add":{"text":" const int nfabs = fab.size();","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3714"}},{"Add":{"text":" vector boxes(2 * ndims * nfabs);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3760"}},{"Add":{"text":" for (int component = 0; component < nfabs; ++component) {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3826"}},{"Add":{"text":" const amrex::Box &fabbox = fab.box(component); // valid region","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3899"}},{"Add":{"text":" for (int d = 0; d < ndims; ++d)","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:3941"}},{"Add":{"text":" boxes[d + 2 * ndims * component] = fabbox.smallEnd(d);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4008"}},{"Add":{"text":" for (int d = 0; d < ndims; ++d)","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4050"}},{"Add":{"text":" boxes[d + ndims + 2 * ndims * component] = fabbox.bigEnd(d);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4123"}},{"Add":{"text":" }","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4133"}},{"Add":{"text":" const int dims[2] = {nfabs, 2 * ndims};","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4181"}},{"Add":{"text":" const string varname =","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4212"}},{"Add":{"text":" dirname + \"/\" + make_fabarraybasename(leveldata.level);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4280"}},{"Add":{"text":" ierr = DBWrite(metafile.get(), varname.c_str(), boxes.data(), dims, 2,","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4359"}},{"Add":{"text":" DB_INT);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4391"}},{"Add":{"text":" assert(!ierr);","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4414"}},{"Add":{"text":" }","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4422"}},{"Add":{"text":" }","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4428"}},{"Add":{"text":"","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4429"}},{"Add":{"text":" {","pos":"6HNSPTE4TIMYKW63HKOVYZAZHTNC5I6BSVWO56PKEEUPS5I3BLEAC:4435"}}]}}],"owner":"eschnett","repo":"cactusamrex","login":null}

…

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