{"header":{"message":"AMR with point charge\n","description":null,"timestamp":"2019-08-06T19:37:37Z","authors":[{"email":"schnetter@gmail.com","name":"Erik Schnetter"}]},"hash":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC","authors":[],"deps":{"hashes":[["FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC","AMR with point charge\n"],["AA",null],["5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC","Prepare for non-periodic boundaries\n"],["2XYZZL42IEZHGDJA6NDKGSQKGJP24LOTLFJ6RNHOKWHHSUYIHGKQC","AMR works now, this time even with prolongation\n"],["IEFVL4X5BPCLUX5D24ESP7FTFSX2HMCD2GOIFCMSWNUYEHQEJOIAC","More output while traversing schedule\n"],["PQB3EKQ6MBCXPTW4HB7SGMSTOTYMB3EFZX2573OFCQI6PSOEKCSQC","Use thread-local cGH structures for multi-threading\n"],["2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC","AMR evolution should work now\n"],["BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC","Set up cctkGH entries\n"],["MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC","Snapshot before transitioning from AmrMesh to AmrCore\n"],["722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC","Import initial AMReX driver for Cactus\n"],["U77PE56ICORZNQW33NXGSEMW7GDHCSSZ4EXB6OHBJSHEG6WHYSSQC","Register schedule traverse functions\n"],["33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC","AMR is now adaptive\n"],["AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC","Handle grid function pointers in driver\n"],["TOBGHRPKEPSXDN56WGSZNWOMCBVJ4KUSLWYWI56MC2RR3MM3KLZAC","Restrict during evolution\n"],["RTNZAS3UPI6GG3KY4Z5WVXJ4R2YF5427BB6WAV3GHRS5W7XPOSUQC","Initialize coordinates in the driver\n"],["IVHURSHY4636OGIF3PNDO5CWOVRLJ75M4LP65J6I2E6KAM4QKF4AC","Overload parallel driver functions\n"],["VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC","Implement reduction operations\n"],["UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC","Store time levels separately\n"],["KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC","AMR works\n"],["WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC","Begin to support multiple refinement levels\n"],["WE6MDRN5SPK3THM4COLQFE3IUWBCQ5ZYUIAUCBJAZVEMMOVTNBOAC","Synchronize in the driver\n"],["RCLGQ2LZMFVPBPTU2G55DJ6HZPOGGTPZRZCY54VGP6YLHANJ2LAQC","Move I/O to driver. WaveToy is now driver-independent.\n"],["2DD222JSYRPHTXKSRXLSOMSCQPZUORNFLLO2P3GMIDELAAMD5MEQC","Rename some ghext variables\n"],["QN2UTSQP4IMCMVXZNR24J22N24ASGXF6EWXQ2P3VWVQERUPFAFDQC","Use AmrMesh class\n"],["TVBD244E7Q7WV44CRBTFST535NUP3JAZH6OLL4IKDR3OWEXSU7HAC","Make AMR adaptive (for initial conditions)\n"],["ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC","Move tile iterator to CallFunction\n"],["6JG4USUIDVMK7A4VPF5DA3VMYFALQXDRRUDF7FJQ5FZ3VCGGINIQC","Move self-tests into new thorn AMReXTest\n"],["UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC","Overload evolution manager\n"],["7Y37CMWGUQY3IOMFZW46UINY2W5DIEE3TXGN7RDKYZO6FHCLHDBQC","Azure pipelines: Reduce problem size for test case\n"]],"deps":["5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC"],"known":["722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC","6JG4USUIDVMK7A4VPF5DA3VMYFALQXDRRUDF7FJQ5FZ3VCGGINIQC","U77PE56ICORZNQW33NXGSEMW7GDHCSSZ4EXB6OHBJSHEG6WHYSSQC","IEFVL4X5BPCLUX5D24ESP7FTFSX2HMCD2GOIFCMSWNUYEHQEJOIAC","ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC","BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC","AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC","UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC","PQB3EKQ6MBCXPTW4HB7SGMSTOTYMB3EFZX2573OFCQI6PSOEKCSQC","RTNZAS3UPI6GG3KY4Z5WVXJ4R2YF5427BB6WAV3GHRS5W7XPOSUQC","WE6MDRN5SPK3THM4COLQFE3IUWBCQ5ZYUIAUCBJAZVEMMOVTNBOAC","RCLGQ2LZMFVPBPTU2G55DJ6HZPOGGTPZRZCY54VGP6YLHANJ2LAQC","IVHURSHY4636OGIF3PNDO5CWOVRLJ75M4LP65J6I2E6KAM4QKF4AC","WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC","UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC","2DD222JSYRPHTXKSRXLSOMSCQPZUORNFLLO2P3GMIDELAAMD5MEQC","VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC","QN2UTSQP4IMCMVXZNR24J22N24ASGXF6EWXQ2P3VWVQERUPFAFDQC","KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC","2XYZZL42IEZHGDJA6NDKGSQKGJP24LOTLFJ6RNHOKWHHSUYIHGKQC","MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC","TVBD244E7Q7WV44CRBTFST535NUP3JAZH6OLL4IKDR3OWEXSU7HAC","TOBGHRPKEPSXDN56WGSZNWOMCBVJ4KUSLWYWI56MC2RR3MM3KLZAC","2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC","33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC"]},"hunks":[{"Edit":{"inode":{"change":3,"pos":17976},"path":"AMReX/interface.ccl","line":6,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":14}],"down_context":[{"change":3,"pos":0}],"flag":"BLOCK","start":0,"end":238,"inode":{"change":3,"pos":17976}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:0"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2"}},{"Add":{"text":"INCLUDES HEADER: loop.hxx IN loop.hxx","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:40"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:41"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:42"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:43"}},{"Add":{"text":"void FUNCTION GetTileExtent(","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:72"}},{"Add":{"text":" CCTK_POINTER_TO_CONST IN cctkGH,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:107"}},{"Add":{"text":" CCTK_INT ARRAY OUT tile_min,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:138"}},{"Add":{"text":" CCTK_INT ARRAY OUT tile_max)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:169"}},{"Add":{"text":"PROVIDES FUNCTION GetTileExtent WITH AMReX_GetTileExtent LANGUAGE C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:237"}}]}},{"Replacement":{"inode":{"change":2,"pos":15},"path":"AMReX/par/gaussian.par","line":7,"ins":{"up_context":[{"change":2,"pos":75}],"down_context":[{"change":2,"pos":101}],"flag":"BLOCK","start":239,"end":265,"inode":{"change":2,"pos":15}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":75},"to":{"change":2,"start":75,"end":101},"introduced_by":2}],"inode":{"change":2,"pos":15}},"ins_contents":[{"Add":{"text":"$nlevels = 5","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:251"}},{"Add":{"text":"$ncells = 32","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:264"}}],"del_contents":[{"Del":{"text":"$nlevels = 6","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:87"}},{"Del":{"text":"$ncells = 16","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:100"}}]}},{"Replacement":{"inode":{"change":2,"pos":15},"path":"AMReX/par/gaussian.par","line":12,"ins":{"up_context":[{"change":2,"pos":135}],"down_context":[{"change":2,"pos":191}],"flag":"BLOCK","start":266,"end":322,"inode":{"change":2,"pos":15}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":135},"to":{"change":2,"start":135,"end":191},"introduced_by":2}],"inode":{"change":2,"pos":15}},"ins_contents":[{"Add":{"text":"Cactus::cctk_itlast = $ncells * 2 ** ($nlevels - 1) / 2","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:321"}}],"del_contents":[{"Del":{"text":"Cactus::cctk_itlast = $ncells * 2 ** ($nlevels - 1) * 2","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:190"}}]}},{"Replacement":{"inode":{"change":2,"pos":15},"path":"AMReX/par/gaussian.par","line":22,"ins":{"up_context":[{"change":2,"pos":353}],"down_context":[{"change":2,"pos":402}],"flag":"BLOCK","start":323,"end":360,"inode":{"change":2,"pos":15}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":353},"to":{"change":2,"start":353,"end":402},"introduced_by":2}],"inode":{"change":2,"pos":15}},"ins_contents":[{"Add":{"text":"AMReX::regrid_error_threshold = 0.01","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:359"}}],"del_contents":[{"Del":{"text":"AMReX::regrid_error_threshold = 0.01 #TODO 0.1","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:401"}}]}},{"Edit":{"inode":{"change":2,"pos":15},"path":"AMReX/par/gaussian.par","line":28,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":469},"to":{"change":2,"start":469,"end":596},"introduced_by":2}],"inode":{"change":2,"pos":15}}},"contents":[{"Del":{"text":"# WaveToyAMReX::spatial_frequency_x = 0.5","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:510"}},{"Del":{"text":"# WaveToyAMReX::spatial_frequency_y = 0.0","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:552"}},{"Del":{"text":"# WaveToyAMReX::spatial_frequency_z = 0.0","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:594"}},{"Del":{"text":"","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:595"}}]}},{"Replacement":{"inode":{"change":2,"pos":15},"path":"AMReX/par/gaussian.par","line":29,"ins":{"up_context":[{"change":2,"pos":619}],"down_context":[],"flag":"BLOCK","start":361,"end":422,"inode":{"change":2,"pos":15}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":619},"to":{"change":2,"start":619,"end":680},"introduced_by":2}],"inode":{"change":2,"pos":15}},"ins_contents":[{"Add":{"text":"IO::out_every = 2 #TODO $ncells * 2 ** ($nlevels - 1) / 32","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:421"}}],"del_contents":[{"Del":{"text":"IO::out_every = 16 #TODO $ncells * 2 ** ($nlevels - 1) / 2","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:679"}}]}},{"Replacement":{"inode":{"change":3,"pos":89},"path":"AMReX/par/planewave.par","line":22,"ins":{"up_context":[{"change":3,"pos":425}],"down_context":[{"change":3,"pos":479}],"flag":"BLOCK","start":423,"end":460,"inode":{"change":3,"pos":89}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":425},"to":{"change":2,"start":719,"end":768},"introduced_by":2}],"inode":{"change":3,"pos":89}},"ins_contents":[{"Add":{"text":"AMReX::regrid_error_threshold = 0.01","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:459"}}],"del_contents":[{"Del":{"text":"AMReX::regrid_error_threshold = 0.01 #TODO 0.1","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:767"}}]}},{"FileAdd":{"meta":{"basename":"potential.par","metadata":420},"path":"AMReX/par/potential.par","context":[{"change":29,"pos":6}],"contents":[{"Add":{"text":"ActiveThorns = \"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:494"}},{"Add":{"text":" AMReX","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:504"}},{"Add":{"text":" IOUtil","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:515"}},{"Add":{"text":" WaveToyAMReX","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:532"}},{"Add":{"text":"\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:534"}},{"Add":{"text":" ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:536"}},{"Add":{"text":"$nlevels = 7","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:549"}},{"Add":{"text":"$ncells = 32","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:562"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:563"}},{"Add":{"text":"Cactus::cctk_show_schedule = no","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:595"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:596"}},{"Add":{"text":"# Cactus::terminate = \"iteration\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:630"}},{"Add":{"text":"# Cactus::cctk_itlast = 64 #TODO 0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:667"}},{"Add":{"text":"Cactus::terminate = \"time\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:694"}},{"Add":{"text":"Cactus::cctk_final_time = 50.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:725"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:726"}},{"Add":{"text":"# AMReX::verbose = yes","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:749"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:750"}},{"Add":{"text":"AMReX::xmin = -100.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:771"}},{"Add":{"text":"AMReX::ymin = -100.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:792"}},{"Add":{"text":"AMReX::zmin = -100.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:813"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:814"}},{"Add":{"text":"AMReX::xmax = +100.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:835"}},{"Add":{"text":"AMReX::ymax = +100.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:856"}},{"Add":{"text":"AMReX::zmax = +100.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:877"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:878"}},{"Add":{"text":"AMReX::ncells_x = $ncells","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:904"}},{"Add":{"text":"AMReX::ncells_y = $ncells","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:930"}},{"Add":{"text":"AMReX::ncells_z = $ncells","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:956"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:957"}},{"Add":{"text":"# AMReX::periodic_x = no","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:982"}},{"Add":{"text":"# AMReX::periodic_y = no","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1007"}},{"Add":{"text":"# AMReX::periodic_z = no","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1032"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1033"}},{"Add":{"text":"AMReX::max_num_levels = $nlevels","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1066"}},{"Add":{"text":"AMReX::regrid_every = 16","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1091"}},{"Add":{"text":"AMReX::regrid_error_threshold = 0.1","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1127"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1128"}},{"Add":{"text":"AMReX::dtfac = 0.5","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1147"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1148"}},{"Add":{"text":"WaveToyAMReX::initial_condition = \"central potential\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1202"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1203"}},{"Add":{"text":"WaveToyAMReX::boundary_condition = \"initial\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1248"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1249"}},{"Add":{"text":"WaveToyAMReX::central_point_charge = 1.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1290"}},{"Add":{"text":"WaveToyAMReX::central_point_radius = 1.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1331"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1332"}},{"Add":{"text":"IO::out_dir = $parfile","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1355"}},{"Add":{"text":"IO::out_every = $ncells * 2 ** ($nlevels - 1) / 32","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1406"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":1,"ins":{"up_context":[{"change":3,"pos":15972}],"down_context":[{"change":3,"pos":16014}],"flag":"BLOCK","start":1408,"end":1472,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":15972},"to":{"change":3,"start":0,"end":22},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":22},"to":{"change":3,"start":24,"end":42},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":15994},"to":{"change":3,"start":24,"end":42},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":42},"to":{"change":3,"start":156,"end":180},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":15994},"to":{"change":3,"start":156,"end":180},"introduced_by":3}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":"#include \"driver.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1429"}},{"Add":{"text":"#include \"io.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1447"}},{"Add":{"text":"#include \"schedule.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1471"}}],"del_contents":[{"Del":{"text":"#include ","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:21"}},{"Del":{"text":"#include ","pos":"RCLGQ2LZMFVPBPTU2G55DJ6HZPOGGTPZRZCY54VGP6YLHANJ2LAQC:41"}},{"Del":{"text":"#include ","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:179"}}]}},{"Edit":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":48,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":82},"to":{"change":3,"start":70,"end":242},"introduced_by":3}],"inode":{"change":3,"pos":15972}}},"contents":[{"Del":{"text":"","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:70"}},{"Del":{"text":"namespace {","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:82"}},{"Del":{"text":"// Convert a (direction, face) pair to an AMReX Orientation","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:142"}},{"Del":{"text":"Orientation orient(int d, int f) {","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:177"}},{"Del":{"text":" return Orientation(d, Orientation::Side(f));","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:224"}},{"Del":{"text":"}","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:226"}},{"Del":{"text":"} // namespace","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:241"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":87,"ins":{"up_context":[{"change":3,"pos":1190}],"down_context":[{"change":3,"pos":1501}],"flag":"BLOCK","start":1473,"end":1511,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1190},"to":{"change":3,"start":1190,"end":1411},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1411},"to":{"change":3,"start":1434,"end":1500},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":1500},"to":{"change":3,"start":1411,"end":1501},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1411},"to":{"change":3,"start":1411,"end":1501},"introduced_by":3}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":" GridPtrDesc grid(leveldata, mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1510"}}],"del_contents":[{"Del":{"text":" const Box &fbx = mfi.fabbox();","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1224"}},{"Del":{"text":" const Box &bx = mfi.tilebox();","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1259"}},{"Del":{"text":"","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1260"}},{"Del":{"text":" const Dim3 imin = lbound(bx);","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1294"}},{"Del":{"text":" int ash[3], lsh[3];","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1318"}},{"Del":{"text":" for (int d = 0; d < dim; ++d)","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1352"}},{"Del":{"text":" ash[d] = fbx[orient(d, 1)] - fbx[orient(d, 0)] + 1;","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1410"}},{"Del":{"text":" // Note: This excludes ghosts, it's not the proper Cactus lsh","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:1499"}},{"Del":{"text":" for (int d = 0; d < dim; ++d)","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1444"}},{"Del":{"text":" lsh[d] = bx[orient(d, 1)] - bx[orient(d, 0)] + 1;","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1500"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":90,"ins":{"up_context":[{"change":3,"pos":1572}],"down_context":[{"change":3,"pos":1697}],"flag":"BLOCK","start":1512,"end":1615,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1572},"to":{"change":3,"start":1145,"end":1219},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":1219},"to":{"change":3,"start":1646,"end":1696},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1646},"to":{"change":3,"start":1646,"end":1696},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":1696},"to":{"change":3,"start":1774,"end":1865},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1774},"to":{"change":3,"start":1774,"end":1865},"introduced_by":3}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":" CCTK_REAL *restrict const err = grid.ptr(vars, vi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1567"}},{"Add":{"text":" const Array4 &tag = tags.array(mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1614"}}],"del_contents":[{"Del":{"text":" const CCTK_REAL *restrict err = vars.ptr(imin.x, imin.y, imin.z, vi);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:1218"}},{"Del":{"text":" const Array4 &tagarr = tags.array(mfi);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:1695"}},{"Del":{"text":"","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1774"}},{"Del":{"text":" constexpr int di = 1;","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1800"}},{"Del":{"text":" const int dj = di * ash[0];","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1832"}},{"Del":{"text":" const int dk = dj * ash[1];","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1864"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":93,"ins":{"up_context":[{"change":3,"pos":1698}],"down_context":[{"change":3,"pos":2148}],"flag":"BLOCK","start":1616,"end":1854,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":3,"pos":1698},"to":{"change":3,"start":1865,"end":2051},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1865},"to":{"change":3,"start":1865,"end":2051},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2051},"to":{"change":3,"start":1699,"end":1754},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1754},"to":{"change":3,"start":1220,"end":1300},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":1815},"to":{"change":3,"start":2124,"end":2148},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":1300},"to":{"change":3,"start":2124,"end":2148},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2124},"to":{"change":3,"start":2124,"end":2148},"introduced_by":3}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":" grid.loop_int([&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1669"}},{"Add":{"text":" tag(grid.cactus_offset.x + i, grid.cactus_offset.y + j,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1731"}},{"Add":{"text":" grid.cactus_offset.z + k) =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1769"}},{"Add":{"text":" err[idx] >= regrid_error_threshold ? TagBox::SET : TagBox::CLEAR;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1845"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1853"}}],"del_contents":[{"Del":{"text":" for (int k = 0; k < lsh[2]; ++k) {","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1903"}},{"Del":{"text":" for (int j = 0; j < lsh[1]; ++j) {","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1944"}},{"Del":{"text":"#pragma omp simd","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:1961"}},{"Del":{"text":" for (int i = 0; i < lsh[0]; ++i) {","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:2004"}},{"Del":{"text":" int idx = di * i + dj * j + dk * k;","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:2050"}},{"Del":{"text":" tagarr(imin.x + i, imin.y + j, imin.z + k) =","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:1753"}},{"Del":{"text":" err[idx] >= regrid_error_threshold ? TagBox::SET : TagBox::CLEAR;","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:1299"}},{"Del":{"text":" }","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:2133"}},{"Del":{"text":" }","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:2141"}},{"Del":{"text":" }","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:2147"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":128,"ins":{"up_context":[{"change":3,"pos":2273}],"down_context":[{"change":3,"pos":2335}],"flag":"BLOCK","start":1855,"end":1917,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2273},"to":{"change":2,"start":1104,"end":1164},"introduced_by":2}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":" for (int tl = 0; tl < int(groupdata.mfab.size()); ++tl) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1916"}}],"del_contents":[{"Del":{"text":" for (int tl = 0; tl < int(groupdata.mfab.size()); ++tl)","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:1163"}}]}},{"Edit":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":131,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":2437}],"down_context":[{"change":3,"pos":2443}],"flag":"BLOCK","start":1918,"end":2555,"inode":{"change":3,"pos":15972}}},"contents":[{"Add":{"text":" // Set grid functions to nan","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1952"}},{"Add":{"text":" MultiFab &mfab = *groupdata.mfab.at(tl);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:1999"}},{"Add":{"text":" auto mfitinfo = MFItInfo().SetDynamic(true).EnableTiling(","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2063"}},{"Add":{"text":" {max_tile_size_x, max_tile_size_y, max_tile_size_z});","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2127"}},{"Add":{"text":"#pragma omp parallel","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2148"}},{"Add":{"text":" for (MFIter mfi(mfab, mfitinfo); mfi.isValid(); ++mfi) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2211"}},{"Add":{"text":" GridPtrDesc grid(leveldata, mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2253"}},{"Add":{"text":" const Array4 &vars = mfab.array(mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2310"}},{"Add":{"text":" for (int vi = 0; vi < groupdata.numvars; ++vi) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2367"}},{"Add":{"text":" CCTK_REAL *restrict const ptr = grid.ptr(vars, vi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2429"}},{"Add":{"text":" grid.loop_all(","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2454"}},{"Add":{"text":" [&](int i, int j, int k, int idx) { ptr[idx] = 0.0 / 0.0; });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2530"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2540"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2548"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2554"}}]}},{"Edit":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":230,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":4905}],"down_context":[{"change":3,"pos":4905}],"flag":"BLOCK","start":2556,"end":3166,"inode":{"change":3,"pos":15972}}},"contents":[{"Add":{"text":" // Set grid functions to nan","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2592"}},{"Add":{"text":" auto mfitinfo = MFItInfo().SetDynamic(true).EnableTiling(","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2658"}},{"Add":{"text":" {max_tile_size_x, max_tile_size_y, max_tile_size_z});","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2724"}},{"Add":{"text":"#pragma omp parallel","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2745"}},{"Add":{"text":" for (MFIter mfi(*mfab, mfitinfo); mfi.isValid(); ++mfi) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2811"}},{"Add":{"text":" GridPtrDesc grid(leveldata, mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2855"}},{"Add":{"text":" const Array4 &vars = mfab->array(mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2915"}},{"Add":{"text":" for (int vi = 0; vi < groupdata.numvars; ++vi) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:2974"}},{"Add":{"text":" CCTK_REAL *restrict const ptr = grid.ptr(vars, vi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3038"}},{"Add":{"text":" grid.loop_all(","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3065"}},{"Add":{"text":" [&](int i, int j, int k, int idx) { ptr[idx] = 0.0 / 0.0; });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3143"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3155"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3165"}}]}},{"Edit":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":272,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":5975}],"down_context":[{"change":3,"pos":5975}],"flag":"BLOCK","start":3167,"end":3777,"inode":{"change":3,"pos":15972}}},"contents":[{"Add":{"text":" // Set grid functions to nan","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3203"}},{"Add":{"text":" auto mfitinfo = MFItInfo().SetDynamic(true).EnableTiling(","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3269"}},{"Add":{"text":" {max_tile_size_x, max_tile_size_y, max_tile_size_z});","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3335"}},{"Add":{"text":"#pragma omp parallel","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3356"}},{"Add":{"text":" for (MFIter mfi(*mfab, mfitinfo); mfi.isValid(); ++mfi) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3422"}},{"Add":{"text":" GridPtrDesc grid(leveldata, mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3466"}},{"Add":{"text":" const Array4 &vars = mfab->array(mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3526"}},{"Add":{"text":" for (int vi = 0; vi < groupdata.numvars; ++vi) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3585"}},{"Add":{"text":" CCTK_REAL *restrict const ptr = grid.ptr(vars, vi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3649"}},{"Add":{"text":" grid.loop_all(","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3676"}},{"Add":{"text":" [&](int i, int j, int k, int idx) { ptr[idx] = 0.0 / 0.0; });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3754"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3766"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3776"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":302,"ins":{"up_context":[{"change":3,"pos":6545}],"down_context":[{"change":3,"pos":6598}],"flag":"BLOCK","start":3778,"end":3834,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6545},"to":{"change":3,"start":6545,"end":6598},"introduced_by":3}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":" // assert(level == int(ghext->leveldata.size()) - 1);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3833"}}],"del_contents":[{"Del":{"text":" assert(level == int(ghext->leveldata.size()) - 1);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:6597"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":358,"ins":{"up_context":[{"change":2,"pos":2231}],"down_context":[{"change":3,"pos":16433}],"flag":"BLOCK","start":3835,"end":4088,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":2231},"to":{"change":2,"start":2231,"end":2306},"introduced_by":2}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":" // Don't catch Unix signals. If signals are caught, we don't get","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3901"}},{"Add":{"text":" // core files.","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3918"}},{"Add":{"text":" pp.add(\"amrex.signal_handling\", 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:3956"}},{"Add":{"text":" // Throw exceptions for failing AMReX assertions. With exceptions,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4025"}},{"Add":{"text":" // we get core files.","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4049"}},{"Add":{"text":" pp.add(\"amrex.throw_exception\", 1);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4087"}}],"del_contents":[{"Del":{"text":" pp.add(\"amrex.verbose\", true);","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:2263"}},{"Del":{"text":" pp.add(\"amrex.signal_handling\", false);","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:2305"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":392,"ins":{"up_context":[{"change":2,"pos":2324}],"down_context":[{"change":3,"pos":16917}],"flag":"BLOCK","start":4089,"end":4162,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":2324},"to":{"change":2,"start":2324,"end":2394},"introduced_by":2}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":" const Array is_periodic{periodic_x, periodic_y, periodic_z};","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4161"}}],"del_contents":[{"Del":{"text":" const Array periodic{periodic_x, periodic_y, periodic_z};","pos":"5IAXY3XZJTRMMVT2OVIJ6OXQJI6OJPTPCHHA4IVLVMHANCCC5NKAC:2393"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":406,"ins":{"up_context":[{"change":3,"pos":2112}],"down_context":[{"change":3,"pos":17047}],"flag":"BLOCK","start":4163,"end":4236,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2112},"to":{"change":3,"start":2112,"end":2182},"introduced_by":3}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":" domain, max_num_levels - 1, ncells, coord, reffacts, is_periodic);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4235"}}],"del_contents":[{"Del":{"text":" domain, max_num_levels - 1, ncells, coord, reffacts, periodic);","pos":"TVBD244E7Q7WV44CRBTFST535NUP3JAZH6OLL4IKDR3OWEXSU7HAC:2181"}}]}},{"Edit":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":430,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3133},"to":{"change":3,"start":3133,"end":3201},"introduced_by":3}],"inode":{"change":3,"pos":15972}}},"contents":[{"Del":{"text":" if (verbose)","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3147"}},{"Del":{"text":" CCTK_VINFO(\"CreateRefinedGrid level %d\", level);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3200"}}]}},{"Edit":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":433,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":2671}],"down_context":[{"change":3,"pos":2671}],"flag":"BLOCK","start":4237,"end":4306,"inode":{"change":3,"pos":15972}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4237"}},{"Add":{"text":" if (verbose)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4252"}},{"Add":{"text":" CCTK_VINFO(\"CreateRefinedGrid level %d\", level);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4305"}}]}},{"Edit":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":464,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":1707}],"down_context":[{"change":3,"pos":1707}],"flag":"BLOCK","start":4307,"end":4442,"inode":{"change":3,"pos":15972}}},"contents":[{"Add":{"text":" // Should we really do this? Cactus's extension handling mechanism","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4375"}},{"Add":{"text":" // becomes inconsistent once extensions have been unregistered.","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4441"}}]}},{"Edit":{"inode":{"change":3,"pos":15275},"path":"AMReX/src/driver.hxx","line":3,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":344}],"down_context":[{"change":3,"pos":15312}],"flag":"BLOCK","start":4443,"end":4462,"inode":{"change":3,"pos":15275}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4443"}},{"Add":{"text":"#include ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4461"}}]}},{"Edit":{"inode":{"change":3,"pos":15275},"path":"AMReX/src/driver.hxx","line":9,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":15478},"to":{"change":3,"start":15478,"end":15497},"introduced_by":3}],"inode":{"change":3,"pos":15275}}},"contents":[{"Del":{"text":"","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:15478"}},{"Del":{"text":"#include ","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:15496"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":1,"ins":{"up_context":[{"change":3,"pos":107}],"down_context":[{"change":3,"pos":147}],"flag":"BLOCK","start":4463,"end":4552,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":107},"to":{"change":3,"start":434,"end":456},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":456},"to":{"change":3,"start":129,"end":147},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":129},"to":{"change":3,"start":129,"end":147},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":147},"to":{"change":3,"start":24,"end":49},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":"#include \"driver.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4484"}},{"Add":{"text":"#include \"io.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4502"}},{"Add":{"text":"#include \"reduction.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4527"}},{"Add":{"text":"#include \"schedule.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4551"}}],"del_contents":[{"Del":{"text":"#include ","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:455"}},{"Del":{"text":"#include ","pos":"RCLGQ2LZMFVPBPTU2G55DJ6HZPOGGTPZRZCY54VGP6YLHANJ2LAQC:146"}},{"Del":{"text":"#include ","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:48"}}]}},{"Edit":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":28,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3508},"to":{"change":3,"start":3508,"end":3680},"introduced_by":3}],"inode":{"change":3,"pos":107}}},"contents":[{"Del":{"text":"namespace {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3519"}},{"Del":{"text":"// Convert a (direction, face) pair to an AMReX Orientation","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3579"}},{"Del":{"text":"Orientation orient(int d, int f) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3614"}},{"Del":{"text":" return Orientation(d, Orientation::Side(f));","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3661"}},{"Del":{"text":"}","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3663"}},{"Del":{"text":"} // namespace","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3678"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3679"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":31,"ins":{"up_context":[{"change":3,"pos":3835}],"down_context":[{"change":3,"pos":4026}],"flag":"BLOCK","start":4553,"end":4595,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3835},"to":{"change":3,"start":3835,"end":4026},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" const GridDesc &grid) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4594"}}],"del_contents":[{"Del":{"text":" const int *restrict ash, const int *restrict lbnd,","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3903"}},{"Del":{"text":" const int *restrict lsh, const int *restrict bbox,","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:3972"}},{"Del":{"text":" const int *restrict nghostzones) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4025"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":43,"ins":{"up_context":[{"change":3,"pos":4307}],"down_context":[{"change":3,"pos":4443}],"flag":"BLOCK","start":4596,"end":4732,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4307},"to":{"change":3,"start":4307,"end":4443},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" imin[d] = grid.bbox[2 * d] ? 0 : grid.nghostzones[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4653"}},{"Add":{"text":" imax[d] = grid.lsh[d] - (grid.bbox[2 * d + 1] ? 0 : grid.nghostzones[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4731"}}],"del_contents":[{"Del":{"text":" imin[d] = cctk_bbox[2 * d] ? 0 : cctk_nghostzones[d];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4364"}},{"Del":{"text":" imax[d] = cctk_lsh[d] - (cctk_bbox[2 * d + 1] ? 0 : cctk_nghostzones[d]);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4442"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":48,"ins":{"up_context":[{"change":3,"pos":4472}],"down_context":[{"change":3,"pos":4532}],"flag":"BLOCK","start":4733,"end":4803,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4472},"to":{"change":3,"start":4472,"end":4532},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" const int dj = di * grid.ash[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4767"}},{"Add":{"text":" const int dk = dj * grid.ash[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4802"}}],"del_contents":[{"Del":{"text":" const int dj = di * ash[0];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4501"}},{"Del":{"text":" const int dk = dj * ash[1];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4531"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":51,"ins":{"up_context":[{"change":3,"pos":4533}],"down_context":[{"change":3,"pos":4650}],"flag":"BLOCK","start":4804,"end":4936,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4533},"to":{"change":3,"start":4533,"end":4650},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" for (int k = 0; k < grid.lsh[2]; ++k) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4845"}},{"Add":{"text":" for (int j = 0; j < grid.lsh[1]; ++j) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4889"}},{"Add":{"text":" for (int i = 0; i < grid.lsh[0]; ++i) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4935"}}],"del_contents":[{"Del":{"text":" for (int k = 0; k < lsh[2]; ++k) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4569"}},{"Del":{"text":" for (int j = 0; j < lsh[1]; ++j) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4608"}},{"Del":{"text":" for (int i = 0; i < lsh[0]; ++i) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4649"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":57,"ins":{"up_context":[{"change":3,"pos":4852}],"down_context":[{"change":3,"pos":4987}],"flag":"BLOCK","start":4937,"end":5087,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4852},"to":{"change":3,"start":4852,"end":4987},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" T x = x0[0] + (grid.lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:4986"}},{"Add":{"text":" T y = x0[1] + (grid.lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5036"}},{"Add":{"text":" T z = x0[2] + (grid.lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5086"}}],"del_contents":[{"Del":{"text":" T x = x0[0] + (lbnd[0] + i) * dx[0];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4896"}},{"Del":{"text":" T y = x0[1] + (lbnd[1] + j) * dx[1];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4941"}},{"Del":{"text":" T z = x0[2] + (lbnd[2] + k) * dx[2];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:4986"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":61,"ins":{"up_context":[{"change":3,"pos":5062}],"down_context":[{"change":3,"pos":5242}],"flag":"BLOCK","start":5088,"end":5283,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":5062},"to":{"change":3,"start":5062,"end":5242},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" << component << \"\\t\" << isghost << \"\\t\" << (grid.lbnd[0] + i) << \"\\t\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5168"}},{"Add":{"text":" << (grid.lbnd[1] + j) << \"\\t\" << (grid.lbnd[2] + k) << \"\\t\" << x","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5244"}},{"Add":{"text":" << \"\\t\" << y << \"\\t\" << z;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5282"}}],"del_contents":[{"Del":{"text":" << component << \"\\t\" << isghost << \"\\t\" << (lbnd[0] + i) << \"\\t\"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:5137"}},{"Del":{"text":" << (lbnd[1] + j) << \"\\t\" << (lbnd[2] + k) << \"\\t\" << x << \"\\t\" << y","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:5216"}},{"Del":{"text":" << \"\\t\" << z;","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:5241"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":109,"ins":{"up_context":[{"change":3,"pos":6220}],"down_context":[{"change":3,"pos":7196}],"flag":"BLOCK","start":5284,"end":5324,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6220},"to":{"change":3,"start":6220,"end":7196},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" GridPtrDesc grid(leveldata, mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5323"}}],"del_contents":[{"Del":{"text":" const Box &fbx = mfi.fabbox(); // allocated array","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6281"}},{"Del":{"text":" const Box &bx = mfi.tilebox(); // current region (without ghosts)","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6359"}},{"Del":{"text":" const Box &gbx = mfi.growntilebox(); // current region (with ghosts)","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6434"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6435"}},{"Del":{"text":" const Dim3 imin = lbound(gbx);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6472"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6473"}},{"Del":{"text":" // Local shape","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6494"}},{"Del":{"text":" int lsh[dim];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6514"}},{"Del":{"text":" for (int d = 0; d < dim; ++d)","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6550"}},{"Del":{"text":" lsh[d] = gbx[orient(d, 1)] - gbx[orient(d, 0)] + 1;","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6610"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6611"}},{"Del":{"text":" // Allocated shape","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6636"}},{"Del":{"text":" int ash[dim];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6656"}},{"Del":{"text":" for (int d = 0; d < dim; ++d)","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6692"}},{"Del":{"text":" ash[d] = fbx[orient(d, 1)] - fbx[orient(d, 0)] + 1;","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6752"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6753"}},{"Del":{"text":" // Local extent","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6775"}},{"Del":{"text":" int lbnd[dim];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6796"}},{"Del":{"text":" for (int d = 0; d < dim; ++d)","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6832"}},{"Del":{"text":" lbnd[d] = gbx[orient(d, 0)];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6869"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6870"}},{"Del":{"text":" // Boundaries","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6890"}},{"Del":{"text":" int bbox[2 * dim];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6915"}},{"Del":{"text":" for (int d = 0; d < dim; ++d)","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6951"}},{"Del":{"text":" for (int f = 0; f < 2; ++f)","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:6987"}},{"Del":{"text":" bbox[2 * d + f] = bx[orient(d, f)] == gbx[orient(d, f)];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7054"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7055"}},{"Del":{"text":" // Number of ghost zones","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7086"}},{"Del":{"text":" int nghostzones[dim];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7114"}},{"Del":{"text":" for (int d = 0; d < dim; ++d)","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7150"}},{"Del":{"text":" nghostzones[d] = mfab.fb_nghost[d];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7194"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7195"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":113,"ins":{"up_context":[{"change":3,"pos":7379}],"down_context":[{"change":3,"pos":7563}],"flag":"BLOCK","start":5325,"end":5443,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":7379},"to":{"change":3,"start":7379,"end":7563},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" ptrs.at(vi) = grid.ptr(vars, vi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5366"}},{"Add":{"text":" write_arrays(file, cctkGH, leveldata.level, mfi.index(), ptrs, grid);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5442"}}],"del_contents":[{"Del":{"text":" ptrs.at(vi) = vars.ptr(imin.x, imin.y, imin.z, vi);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7438"}},{"Del":{"text":" write_arrays(file, cctkGH, leveldata.level, mfi.index(), ptrs, ash, lbnd,","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7518"}},{"Del":{"text":" lsh, bbox, nghostzones);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:7562"}}]}},{"Edit":{"inode":{"change":3,"pos":4123},"path":"AMReX/src/level.cxx","line":1,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":4123}],"down_context":[{"change":3,"pos":4124}],"flag":"BLOCK","start":5444,"end":5469,"inode":{"change":3,"pos":4123}}},"contents":[{"Add":{"text":"#include \"schedule.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5467"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5468"}}]}},{"FileAdd":{"meta":{"basename":"loop.hxx","metadata":420},"path":"AMReX/src/loop.hxx","context":[{"change":3,"pos":15096}],"contents":[{"Add":{"text":"#ifndef LOOP_HXX","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5498"}},{"Add":{"text":"#define LOOP_HXX","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5515"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5516"}},{"Add":{"text":"#include ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5534"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5535"}},{"Add":{"text":"#include ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5552"}},{"Add":{"text":"#include ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5572"}},{"Add":{"text":"#include ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5590"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5591"}},{"Add":{"text":"namespace Loop {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5608"}},{"Add":{"text":"using namespace std;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5629"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5630"}},{"Add":{"text":"constexpr int dim = 3;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5653"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5654"}},{"Add":{"text":"struct GridDescBase {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5676"}},{"Add":{"text":" array gsh;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5699"}},{"Add":{"text":" array lbnd, ubnd;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5729"}},{"Add":{"text":" array lsh;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5752"}},{"Add":{"text":" array ash;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5775"}},{"Add":{"text":" array bbox;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5803"}},{"Add":{"text":" array nghostzones;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5834"}},{"Add":{"text":" array tmin, tmax;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5864"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5865"}},{"Add":{"text":" template ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5899"}},{"Add":{"text":" static void output(ostream &os, const string &str, const array &arr) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:5978"}},{"Add":{"text":" os << str << \":[\";","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6001"}},{"Add":{"text":" for (size_t n = 0; n < N; ++n) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6038"}},{"Add":{"text":" if (n > 0)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6055"}},{"Add":{"text":" os << \",\";","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6074"}},{"Add":{"text":" os << arr[n];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6094"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6100"}},{"Add":{"text":" os << \"]\";","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6115"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6119"}},{"Add":{"text":" friend ostream &operator<<(ostream &os, const GridDescBase &grid) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6189"}},{"Add":{"text":" os << \"GridDescBase{\";","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6216"}},{"Add":{"text":" output(os, \"gsh\", grid.gsh);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6249"}},{"Add":{"text":" output(os, \",lbnd\", grid.lbnd);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6285"}},{"Add":{"text":" output(os, \",ubnd\", grid.ubnd);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6321"}},{"Add":{"text":" output(os, \",lsh\", grid.lsh);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6355"}},{"Add":{"text":" output(os, \",bbox\", grid.bbox);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6391"}},{"Add":{"text":" output(os, \",nghostzones\", grid.nghostzones);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6441"}},{"Add":{"text":" output(os, \",tmin\", grid.tmin);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6477"}},{"Add":{"text":" output(os, \",tmax\", grid.tmax);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6513"}},{"Add":{"text":" os << \"}\";","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6528"}},{"Add":{"text":" return os;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6543"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6547"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6548"}},{"Add":{"text":"protected:","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6559"}},{"Add":{"text":" GridDescBase();","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6577"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6578"}},{"Add":{"text":"public:","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6586"}},{"Add":{"text":" GridDescBase(const cGH *cctkGH);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6621"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6622"}},{"Add":{"text":" // Loop over a given box","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6649"}},{"Add":{"text":" template ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6673"}},{"Add":{"text":" void loop_box(const F &f, const array &restrict imin,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6739"}},{"Add":{"text":" const array &restrict imax) const {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6801"}},{"Add":{"text":" // cout << *this;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6823"}},{"Add":{"text":" // output(cout, \",imin\", imin);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6859"}},{"Add":{"text":" // output(cout, \",imax\", imax);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6895"}},{"Add":{"text":" // cout << \"\\n\";","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6916"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6917"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6951"}},{"Add":{"text":" if (imin[d] >= imax[d])","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6981"}},{"Add":{"text":" return;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6997"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:6998"}},{"Add":{"text":" constexpr int di = 1;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7024"}},{"Add":{"text":" const int dj = di * ash[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7056"}},{"Add":{"text":" const int dk = dj * ash[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7088"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7089"}},{"Add":{"text":" for (int k = imin[2]; k < imax[2]; ++k) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7135"}},{"Add":{"text":" for (int j = imin[1]; j < imax[1]; ++j) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7183"}},{"Add":{"text":"#pragma omp simd","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7200"}},{"Add":{"text":" for (int i = imin[0]; i < imax[0]; ++i) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7250"}},{"Add":{"text":" int idx = i * di + j * dj + k * dk;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7296"}},{"Add":{"text":" f(i, j, k, idx);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7323"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7333"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7341"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7347"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7351"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7352"}},{"Add":{"text":" // Loop over all points","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7378"}},{"Add":{"text":" template void loop_all(const F &f) const {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7436"}},{"Add":{"text":" array imin, imax;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7468"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7504"}},{"Add":{"text":" imin[d] = max(tmin[d], 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7537"}},{"Add":{"text":" imax[d] = min(tmax[d], lsh[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7575"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7581"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7582"}},{"Add":{"text":" loop_box(f, imin, imax);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7611"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7615"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7616"}},{"Add":{"text":" // Loop over all interior points","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7651"}},{"Add":{"text":" template void loop_int(const F &f) const {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7709"}},{"Add":{"text":" array imin, imax;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7741"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7777"}},{"Add":{"text":" imin[d] = max(tmin[d], nghostzones[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7823"}},{"Add":{"text":" imax[d] = min(tmax[d], lsh[d] - nghostzones[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7878"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7884"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7885"}},{"Add":{"text":" loop_box(f, imin, imax);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7914"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7918"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7919"}},{"Add":{"text":" // Loop over all outer boundary points. This excludes ghost faces, but","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:7992"}},{"Add":{"text":" // includes ghost edges/corners on non-ghost faces.","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8046"}},{"Add":{"text":" template void loop_bnd(const F &f) const {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8104"}},{"Add":{"text":" for (int dir = 0; dir < dim; ++dir) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8146"}},{"Add":{"text":" for (int face = 0; face < 2; ++face) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8191"}},{"Add":{"text":" if (bbox[2 * dir + face]) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8227"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8228"}},{"Add":{"text":" array imin, imax;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8266"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8308"}},{"Add":{"text":" // by default, include interior and outer boundaries and ghosts","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8384"}},{"Add":{"text":" imin[d] = 0;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8409"}},{"Add":{"text":" imax[d] = lsh[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8439"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8440"}},{"Add":{"text":" // avoid covering edges and corners multiple times","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8503"}},{"Add":{"text":" if (d < dir) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8530"}},{"Add":{"text":" if (bbox[2 * d])","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8561"}},{"Add":{"text":" imin[d] = nghostzones[d]; // only interior","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8620"}},{"Add":{"text":" if (bbox[2 * d + 1])","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8655"}},{"Add":{"text":" imax[d] = lsh[d] - nghostzones[d]; // only interior","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8723"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8737"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8749"}},{"Add":{"text":" // only one face on outer boundary","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8794"}},{"Add":{"text":" if (face == 0)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8819"}},{"Add":{"text":" imax[dir] = nghostzones[dir];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8861"}},{"Add":{"text":" else","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8876"}},{"Add":{"text":" imin[dir] = lsh[dir] - nghostzones[dir];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8929"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8930"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:8972"}},{"Add":{"text":" imin[d] = max(tmin[d], imin[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9017"}},{"Add":{"text":" imax[d] = min(tmax[d], imax[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9062"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9074"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9075"}},{"Add":{"text":" loop_box(f, imin, imax);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9110"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9120"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9128"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9134"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9138"}},{"Add":{"text":"};","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9141"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9142"}},{"Add":{"text":"template void loop_all(const cGH *cctkGH, const F &f) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9211"}},{"Add":{"text":" GridDescBase(cctkGH).loop_all(f);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9247"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9249"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9250"}},{"Add":{"text":"template void loop_int(const cGH *cctkGH, const F &f) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9319"}},{"Add":{"text":" GridDescBase(cctkGH).loop_int(f);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9355"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9357"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9358"}},{"Add":{"text":"template void loop_bnd(const cGH *cctkGH, const F &f) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9427"}},{"Add":{"text":" GridDescBase(cctkGH).loop_bnd(f);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9463"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9465"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9466"}},{"Add":{"text":"} // namespace Loop","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9486"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9487"}},{"Add":{"text":"#endif // #ifndef LOOP_HXX","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9514"}}]}},{"Replacement":{"inode":{"change":3,"pos":870},"path":"AMReX/src/reduction.cxx","line":1,"ins":{"up_context":[{"change":3,"pos":870}],"down_context":[{"change":3,"pos":8394}],"flag":"BLOCK","start":9516,"end":9587,"inode":{"change":3,"pos":870}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":870},"to":{"change":3,"start":871,"end":918},"introduced_by":3}],"inode":{"change":3,"pos":870}},"ins_contents":[{"Add":{"text":"#include \"driver.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9537"}},{"Add":{"text":"#include \"reduction.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9562"}},{"Add":{"text":"#include \"schedule.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9586"}}],"del_contents":[{"Del":{"text":"#include ","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:892"}},{"Del":{"text":"#include ","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:917"}}]}},{"Edit":{"inode":{"change":3,"pos":870},"path":"AMReX/src/reduction.cxx","line":12,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1013},"to":{"change":3,"start":1013,"end":1185},"introduced_by":3}],"inode":{"change":3,"pos":870}}},"contents":[{"Del":{"text":"","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1013"}},{"Del":{"text":"namespace {","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1025"}},{"Del":{"text":"// Convert a (direction, face) pair to an AMReX Orientation","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1085"}},{"Del":{"text":"Orientation orient(int d, int f) {","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1120"}},{"Del":{"text":" return Orientation(d, Orientation::Side(f));","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1167"}},{"Del":{"text":"}","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1169"}},{"Del":{"text":"} // namespace","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1184"}}]}},{"Replacement":{"inode":{"change":3,"pos":870},"path":"AMReX/src/reduction.cxx","line":15,"ins":{"up_context":[{"change":3,"pos":8496}],"down_context":[{"change":3,"pos":4011}],"flag":"BLOCK","start":9588,"end":9638,"inode":{"change":3,"pos":870}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":3,"pos":8496},"to":{"change":3,"start":3933,"end":4011},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3933},"to":{"change":3,"start":3933,"end":4011},"introduced_by":3}],"inode":{"change":3,"pos":870}},"ins_contents":[{"Add":{"text":" const GridDesc &grid) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9637"}}],"del_contents":[{"Del":{"text":" const int *restrict ash, const int *restrict lsh) {","pos":"KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC:4010"}}]}},{"Edit":{"inode":{"change":3,"pos":870},"path":"AMReX/src/reduction.cxx","line":20,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":4132}],"down_context":[{"change":3,"pos":1335}],"flag":"BLOCK","start":9639,"end":9640,"inode":{"change":3,"pos":870}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9639"}}]}},{"Replacement":{"inode":{"change":3,"pos":870},"path":"AMReX/src/reduction.cxx","line":22,"ins":{"up_context":[{"change":3,"pos":1355}],"down_context":[{"change":3,"pos":1692}],"flag":"BLOCK","start":9641,"end":9757,"inode":{"change":3,"pos":870}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1355},"to":{"change":3,"start":1355,"end":1617},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1617},"to":{"change":3,"start":8497,"end":8558},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":4194},"to":{"change":3,"start":1674,"end":1692},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":8558},"to":{"change":3,"start":1674,"end":1692},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1674},"to":{"change":3,"start":1674,"end":1692},"introduced_by":3}],"inode":{"change":3,"pos":870}},"ins_contents":[{"Add":{"text":" grid.loop_int([&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9692"}},{"Add":{"text":" red = reduction(red, reduction(dV, ptr[idx]));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9749"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9755"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9756"}}],"del_contents":[{"Del":{"text":" constexpr int di = 1;","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1378"}},{"Del":{"text":" const int dj = di * ash[0];","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1408"}},{"Del":{"text":" const int dk = dj * ash[1];","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1438"}},{"Del":{"text":" for (int k = 0; k < lsh[2]; ++k) {","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1475"}},{"Del":{"text":" for (int j = 0; j < lsh[1]; ++j) {","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1514"}},{"Del":{"text":"#pragma omp simd","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1531"}},{"Del":{"text":" for (int i = 0; i < lsh[0]; ++i) {","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1572"}},{"Del":{"text":" int idx = di * i + dj * j + dk * k;","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1616"}},{"Del":{"text":" red = reduction(red, reduction(dV, ptr[idx]));","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:8557"}},{"Del":{"text":" }","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1681"}},{"Del":{"text":" }","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1687"}},{"Del":{"text":" }","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:1691"}}]}},{"Replacement":{"inode":{"change":3,"pos":870},"path":"AMReX/src/reduction.cxx","line":42,"ins":{"up_context":[{"change":3,"pos":2163}],"down_context":[{"change":3,"pos":2241}],"flag":"BLOCK","start":9758,"end":9800,"inode":{"change":3,"pos":870}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2163},"to":{"change":3,"start":2163,"end":2241},"introduced_by":3}],"inode":{"change":3,"pos":870}},"ins_contents":[{"Add":{"text":" GridPtrDesc grid(leveldata, mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9799"}}],"del_contents":[{"Del":{"text":" const Box &fbx = mfi.fabbox();","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:2201"}},{"Del":{"text":" const Box &bx = mfi.tilebox();","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:2240"}}]}},{"Edit":{"inode":{"change":3,"pos":870},"path":"AMReX/src/reduction.cxx","line":44,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2242},"to":{"change":3,"start":2242,"end":2408},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2408},"to":{"change":3,"start":8717,"end":8787},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":8787},"to":{"change":3,"start":2408,"end":2507},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2408},"to":{"change":3,"start":2408,"end":2507},"introduced_by":3}],"inode":{"change":3,"pos":870}}},"contents":[{"Del":{"text":" const Dim3 imin = lbound(bx);","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:2279"}},{"Del":{"text":" int ash[3], lsh[3];","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:2307"}},{"Del":{"text":" for (int d = 0; d < dim; ++d)","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:2345"}},{"Del":{"text":" ash[d] = fbx[orient(d, 1)] - fbx[orient(d, 0)] + 1;","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:2407"}},{"Del":{"text":" // Note: This excludes ghosts, it's not the proper Cactus lsh","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:8786"}},{"Del":{"text":" for (int d = 0; d < dim; ++d)","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:2445"}},{"Del":{"text":" lsh[d] = bx[orient(d, 1)] - bx[orient(d, 0)] + 1;","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:2505"}},{"Del":{"text":"","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:2506"}}]}},{"Replacement":{"inode":{"change":3,"pos":870},"path":"AMReX/src/reduction.cxx","line":45,"ins":{"up_context":[{"change":3,"pos":2582}],"down_context":[{"change":3,"pos":2660}],"flag":"BLOCK","start":9801,"end":9861,"inode":{"change":3,"pos":870}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2582},"to":{"change":3,"start":8788,"end":8866},"introduced_by":3}],"inode":{"change":3,"pos":870}},"ins_contents":[{"Add":{"text":" const CCTK_REAL *restrict ptr = grid.ptr(vars, vi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9860"}}],"del_contents":[{"Del":{"text":" const CCTK_REAL *restrict ptr = vars.ptr(imin.x, imin.y, imin.z, vi);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:8865"}}]}},{"Replacement":{"inode":{"change":3,"pos":870},"path":"AMReX/src/reduction.cxx","line":48,"ins":{"up_context":[{"change":3,"pos":8905}],"down_context":[{"change":3,"pos":2705}],"flag":"BLOCK","start":9862,"end":9908,"inode":{"change":3,"pos":870}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":8905},"to":{"change":3,"start":8905,"end":8955},"introduced_by":3}],"inode":{"change":3,"pos":870}},"ins_contents":[{"Add":{"text":" red += reduce_array(geom, ptr, grid);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9907"}}],"del_contents":[{"Del":{"text":" red += reduce_array(geom, ptr, ash, lsh);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:8954"}}]}},{"Edit":{"inode":{"change":3,"pos":2777},"path":"AMReX/src/reduction.hxx","line":12,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":2941}],"down_context":[{"change":3,"pos":2941}],"flag":"BLOCK","start":9909,"end":10164,"inode":{"change":3,"pos":2777}}},"contents":[{"Add":{"text":" T fmax1(T x, T y) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9930"}},{"Add":{"text":" if (CCTK_isnan(x))","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9953"}},{"Add":{"text":" return x;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9969"}},{"Add":{"text":" if (CCTK_isnan(y))","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:9992"}},{"Add":{"text":" return y;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10008"}},{"Add":{"text":" return fmax(x, y);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10031"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10035"}},{"Add":{"text":" T fmin1(T x, T y) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10057"}},{"Add":{"text":" if (CCTK_isnan(x))","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10080"}},{"Add":{"text":" return x;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10096"}},{"Add":{"text":" if (CCTK_isnan(y))","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10119"}},{"Add":{"text":" return y;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10135"}},{"Add":{"text":" return fmin(x, y);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10158"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10162"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10163"}}]}},{"Replacement":{"inode":{"change":3,"pos":2777},"path":"AMReX/src/reduction.hxx","line":36,"ins":{"up_context":[{"change":3,"pos":4432}],"down_context":[{"change":3,"pos":4503}],"flag":"BLOCK","start":10165,"end":10239,"inode":{"change":3,"pos":2777}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4432},"to":{"change":3,"start":4432,"end":4503},"introduced_by":3}],"inode":{"change":3,"pos":2777}},"ins_contents":[{"Add":{"text":" T sdv() const { return sqrt(fmax1(T(0.0), vol * sum2 - pow(sum, 2))); }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10238"}}],"del_contents":[{"Del":{"text":" T sdv() const { return sqrt(fmax(T(0.0), vol * sum2 - sum * sum)); }","pos":"KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC:4502"}}]}},{"Replacement":{"inode":{"change":3,"pos":2777},"path":"AMReX/src/reduction.hxx","line":50,"ins":{"up_context":[{"change":3,"pos":4790}],"down_context":[{"change":3,"pos":3605}],"flag":"BLOCK","start":10240,"end":10379,"inode":{"change":3,"pos":2777}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4790},"to":{"change":3,"start":4790,"end":4940},"introduced_by":3}],"inode":{"change":3,"pos":2777}},"ins_contents":[{"Add":{"text":" : min(x), max(x), sum(V * x), sum2(pow(V * x, 2)), vol(V), maxabs(fabs(x)),","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10319"}},{"Add":{"text":" sumabs(fabs(V * x)), sum2abs(pow(fabs(V * x), 2)) {}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10378"}}],"del_contents":[{"Del":{"text":" : min(x), max(x), sum(V * x), sum2((V * x) * (V * x)), vol(V),","pos":"KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC:4856"}},{"Del":{"text":" maxabs(fabs(x)), sumabs(fabs(V * x)), sum2abs(fabs(V * x) * fabs(V * x)) {","pos":"KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC:4937"}},{"Del":{"text":"}","pos":"KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC:4939"}}]}},{"Replacement":{"inode":{"change":3,"pos":2777},"path":"AMReX/src/reduction.hxx","line":55,"ins":{"up_context":[{"change":3,"pos":3692}],"down_context":[{"change":3,"pos":4941}],"flag":"BLOCK","start":10380,"end":10458,"inode":{"change":3,"pos":2777}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3692},"to":{"change":3,"start":3692,"end":3768},"introduced_by":3}],"inode":{"change":3,"pos":2777}},"ins_contents":[{"Add":{"text":" : min(fmin1(x.min, y.min)), max(fmax1(x.max, y.max)), sum(x.sum + y.sum),","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10457"}}],"del_contents":[{"Del":{"text":" : min(fmin(x.min, y.min)), max(fmax(x.max, y.max)), sum(x.sum + y.sum),","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:3767"}}]}},{"Replacement":{"inode":{"change":3,"pos":2777},"path":"AMReX/src/reduction.hxx","line":57,"ins":{"up_context":[{"change":3,"pos":4990}],"down_context":[{"change":3,"pos":3892}],"flag":"BLOCK","start":10459,"end":10529,"inode":{"change":3,"pos":2777}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":3,"pos":4990},"to":{"change":3,"start":3823,"end":3892},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3823},"to":{"change":3,"start":3823,"end":3892},"introduced_by":3}],"inode":{"change":3,"pos":2777}},"ins_contents":[{"Add":{"text":" maxabs(fmax1(x.maxabs, y.maxabs)), sumabs(x.sumabs + y.sumabs),","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10528"}}],"del_contents":[{"Del":{"text":" maxabs(fmax(x.maxabs, y.maxabs)), sumabs(x.sumabs + y.sumabs),","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:3891"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":1,"ins":{"up_context":[{"change":3,"pos":531}],"down_context":[{"change":3,"pos":577}],"flag":"BLOCK","start":10530,"end":10576,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":531},"to":{"change":3,"start":1355,"end":1377},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":1377},"to":{"change":3,"start":553,"end":577},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":553},"to":{"change":3,"start":553,"end":577},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":"#include \"driver.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10551"}},{"Add":{"text":"#include \"schedule.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10575"}}],"del_contents":[{"Del":{"text":"#include ","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1376"}},{"Del":{"text":"#include ","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:576"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":25,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":1399}],"down_context":[{"change":3,"pos":767}],"flag":"BLOCK","start":10577,"end":10614,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":"#include ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10594"}},{"Add":{"text":"#include ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10613"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":42,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":4207}],"down_context":[{"change":3,"pos":4579}],"flag":"BLOCK","start":10615,"end":10752,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":"// Tile boxes, should be part of cGH","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10651"}},{"Add":{"text":"struct TileBox {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10668"}},{"Add":{"text":" int tile_min[dim];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10689"}},{"Add":{"text":" int tile_max[dim];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10710"}},{"Add":{"text":"};","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10713"}},{"Add":{"text":"vector thread_local_tilebox;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10751"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":59,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":4318}],"down_context":[{"change":3,"pos":111}],"flag":"BLOCK","start":10753,"end":13596,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10753"}},{"Add":{"text":"// Set up a GridDesc","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10774"}},{"Add":{"text":"} // namespace AMReX","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10795"}},{"Add":{"text":"namespace Loop {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10812"}},{"Add":{"text":"GridDescBase::GridDescBase() {}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10844"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10845"}},{"Add":{"text":"GridDescBase::GridDescBase(const cGH *restrict cctkGH) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10902"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10934"}},{"Add":{"text":" gsh[d] = cctkGH->cctk_gsh[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:10968"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11002"}},{"Add":{"text":" lbnd[d] = cctkGH->cctk_lbnd[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11038"}},{"Add":{"text":" ubnd[d] = cctkGH->cctk_ubnd[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11074"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11078"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11110"}},{"Add":{"text":" lsh[d] = cctkGH->cctk_lsh[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11144"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11176"}},{"Add":{"text":" ash[d] = cctkGH->cctk_ash[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11210"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11242"}},{"Add":{"text":" for (int f = 0; f < 2; ++f)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11274"}},{"Add":{"text":" bbox[2 * d + f] = cctkGH->cctk_bbox[2 * d + f];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11328"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11360"}},{"Add":{"text":" nghostzones[d] = cctkGH->cctk_nghostzones[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11410"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11411"}},{"Add":{"text":" // Check whether we are in local mode","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11451"}},{"Add":{"text":" assert(cctkGH->cctk_bbox[0] != AMReX::undefined);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11503"}},{"Add":{"text":" int thread_num = omp_get_thread_num();","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11544"}},{"Add":{"text":" const cGH *restrict threadGH = &AMReX::thread_local_cctkGH.at(thread_num);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11621"}},{"Add":{"text":" // Check whether this is the correct cGH structure","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11674"}},{"Add":{"text":" assert(cctkGH == threadGH);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11704"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11705"}},{"Add":{"text":" const AMReX::TileBox &restrict tilebox =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11748"}},{"Add":{"text":" AMReX::thread_local_tilebox.at(thread_num);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11798"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11832"}},{"Add":{"text":" tmin[d] = tilebox.tile_min[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11867"}},{"Add":{"text":" tmax[d] = tilebox.tile_max[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11902"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11906"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11908"}},{"Add":{"text":"} // namespace Loop","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11928"}},{"Add":{"text":"namespace AMReX {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11946"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:11947"}},{"Add":{"text":"GridDesc::GridDesc(const GHExt::LevelData &leveldata, const MFIter &mfi) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12022"}},{"Add":{"text":" const Box &fbx = mfi.fabbox(); // allocated array","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12076"}},{"Add":{"text":" const Box &vbx = mfi.validbox(); // interior region (without ghosts)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12147"}},{"Add":{"text":" // const Box &bx = mfi.tilebox(); // current region (without ghosts)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12224"}},{"Add":{"text":" const Box &gbx = mfi.growntilebox(); // current region (with ghosts)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12295"}},{"Add":{"text":" const Box &domain = ghext->amrcore->Geom(leveldata.level).Domain();","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12365"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12366"}},{"Add":{"text":" // The number of ghostzones in each direction","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12414"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12446"}},{"Add":{"text":" nghostzones[d] = mfi.theFabArrayBase().nGrowVect()[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12505"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12506"}},{"Add":{"text":" // Global shape","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12524"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12556"}},{"Add":{"text":" gsh[d] =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12569"}},{"Add":{"text":" domain[orient(d, 1)] - domain[orient(d, 0)] + 1 + 2 * nghostzones[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12647"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12648"}},{"Add":{"text":" // Local shape","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12665"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12697"}},{"Add":{"text":" lsh[d] = fbx[orient(d, 1)] - fbx[orient(d, 0)] + 1;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12753"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12754"}},{"Add":{"text":" // Allocated shape","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12775"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12807"}},{"Add":{"text":" ash[d] = fbx[orient(d, 1)] - fbx[orient(d, 0)] + 1;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12863"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12864"}},{"Add":{"text":" // Local extent","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12882"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12916"}},{"Add":{"text":" lbnd[d] = fbx[orient(d, 0)] + nghostzones[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:12966"}},{"Add":{"text":" ubnd[d] = fbx[orient(d, 1)] + nghostzones[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13016"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13020"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13021"}},{"Add":{"text":" // Boundaries","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13037"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13069"}},{"Add":{"text":" for (int f = 0; f < 2; ++f)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13101"}},{"Add":{"text":" bbox[2 * d + f] = vbx[orient(d, f)] == domain[orient(d, f)];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13168"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13169"}},{"Add":{"text":" // Thread tile box","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13190"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13224"}},{"Add":{"text":" tmin[d] = gbx[orient(d, 0)] - fbx[orient(d, 0)];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13277"}},{"Add":{"text":" tmax[d] = gbx[orient(d, 1)] + 1 - fbx[orient(d, 0)];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13334"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13338"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13339"}},{"Add":{"text":" // Check constraints","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13362"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13396"}},{"Add":{"text":" // Domain size","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13415"}},{"Add":{"text":" assert(gsh[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13440"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13441"}},{"Add":{"text":" // Local size","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13459"}},{"Add":{"text":" assert(lbnd[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13485"}},{"Add":{"text":" assert(lsh[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13510"}},{"Add":{"text":" assert(lbnd[d] + lsh[d] <= gsh[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13550"}},{"Add":{"text":" assert(ubnd[d] == lbnd[d] + lsh[d] - 1);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13595"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":151,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":112}],"down_context":[{"change":3,"pos":112}],"flag":"BLOCK","start":13597,"end":14086,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":" // Internal representation","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13627"}},{"Add":{"text":" assert(ash[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13652"}},{"Add":{"text":" assert(ash[d] >= lsh[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13682"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13683"}},{"Add":{"text":" // Ghost zones","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13702"}},{"Add":{"text":" assert(nghostzones[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13735"}},{"Add":{"text":" assert(2 * nghostzones[d] <= lsh[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13777"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13778"}},{"Add":{"text":" // Tiles","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13791"}},{"Add":{"text":" assert(tmin[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13817"}},{"Add":{"text":" assert(tmax[d] >= tmin[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13849"}},{"Add":{"text":" assert(tmax[d] <= lsh[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13880"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13884"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13886"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13887"}},{"Add":{"text":"GridPtrDesc::GridPtrDesc(const GHExt::LevelData &leveldata, const MFIter &mfi)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13966"}},{"Add":{"text":" : GridDesc(leveldata, mfi) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:13999"}},{"Add":{"text":" const Box &fbx = mfi.fabbox(); // allocated array","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14051"}},{"Add":{"text":" cactus_offset = lbound(fbx);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14082"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14084"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14085"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":219,"ins":{"up_context":[{"change":3,"pos":8990}],"down_context":[{"change":3,"pos":1377}],"flag":"BLOCK","start":14087,"end":14129,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":3,"pos":8990},"to":{"change":3,"start":5140,"end":5196},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1334},"to":{"change":3,"start":5140,"end":5196},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" cctkGH->cctk_origin_space[d] = x0[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14128"}}],"del_contents":[{"Del":{"text":" cctkGH->cctk_origin_space[d] = x0[d] + 0.0 * dx[d];","pos":"KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC:5195"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":273,"ins":{"up_context":[{"change":3,"pos":2503}],"down_context":[{"change":3,"pos":2544}],"flag":"BLOCK","start":14130,"end":14265,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2503},"to":{"change":3,"start":5590,"end":5665},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" cctkGH->cctk_gsh[d] = domain[orient(d, 1)] - domain[orient(d, 0)] + 1 +","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14205"}},{"Add":{"text":" 2 * cctkGH->cctk_nghostzones[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14264"}}],"del_contents":[{"Del":{"text":" cctkGH->cctk_gsh[d] = domain[orient(d, 1)] - domain[orient(d, 0)] + 1;","pos":"KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC:5664"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":283,"ins":{"up_context":[{"change":3,"pos":5880}],"down_context":[{"change":3,"pos":5912}],"flag":"BLOCK","start":14266,"end":14332,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":5880},"to":{"change":3,"start":5880,"end":5912},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" cctkGH->cctk_levoff[d] = 1 - 2 * cctkGH->cctk_nghostzones[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14331"}}],"del_contents":[{"Del":{"text":" cctkGH->cctk_levoff[d] = 1;","pos":"KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC:5911"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":300,"ins":{"up_context":[{"change":3,"pos":3051}],"down_context":[{"change":3,"pos":3311}],"flag":"BLOCK","start":14333,"end":14549,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3051},"to":{"change":3,"start":2303,"end":2428},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":2428},"to":{"change":3,"start":241,"end":516},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":2811},"to":{"change":3,"start":241,"end":516},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3116},"to":{"change":3,"start":241,"end":516},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":"void enter_local_mode(cGH *restrict cctkGH, TileBox &restrict tilebox,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14403"}},{"Add":{"text":" const GHExt::LevelData &restrict leveldata,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14469"}},{"Add":{"text":" const MFIter &mfi) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14512"}},{"Add":{"text":" GridPtrDesc grid(leveldata, mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14548"}}],"del_contents":[{"Del":{"text":"void enter_local_mode(cGH *restrict cctkGH,","pos":"2DD222JSYRPHTXKSRXLSOMSCQPZUORNFLLO2P3GMIDELAAMD5MEQC:2346"}},{"Del":{"text":" GHExt::LevelData &restrict leveldata, const MFIter &mfi) {","pos":"2DD222JSYRPHTXKSRXLSOMSCQPZUORNFLLO2P3GMIDELAAMD5MEQC:2427"}},{"Del":{"text":" const Box &fbx = mfi.fabbox(); // allocated array","pos":"AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC:292"}},{"Del":{"text":" // const Box &vbx = mfi.validbox(); // interior region (without ghosts)","pos":"AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC:370"}},{"Del":{"text":" const Box &bx = mfi.tilebox(); // current region (without ghosts)","pos":"AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC:444"}},{"Del":{"text":" const Box &gbx = mfi.growntilebox(); // current region (with ghosts)","pos":"AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC:515"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":305,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3312},"to":{"change":3,"start":3312,"end":3329},"introduced_by":3}],"inode":{"change":3,"pos":531}}},"contents":[{"Del":{"text":" // Local shape","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:3328"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":306,"ins":{"up_context":[{"change":3,"pos":3361}],"down_context":[{"change":3,"pos":3446}],"flag":"BLOCK","start":14550,"end":14589,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3361},"to":{"change":3,"start":9606,"end":9675},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":9675},"to":{"change":3,"start":3424,"end":3446},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":584},"to":{"change":3,"start":3424,"end":3446},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3424},"to":{"change":3,"start":3424,"end":3446},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" cctkGH->cctk_lsh[d] = grid.lsh[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14588"}}],"del_contents":[{"Del":{"text":" cctkGH->cctk_lsh[d] = gbx[orient(d, 1)] - gbx[orient(d, 0)] + 1;","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:9674"}},{"Del":{"text":"","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:3424"}},{"Del":{"text":" // Allocated shape","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:3445"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":308,"ins":{"up_context":[{"change":3,"pos":3478}],"down_context":[{"change":3,"pos":1782}],"flag":"BLOCK","start":14590,"end":14629,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3478},"to":{"change":3,"start":585,"end":654},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":654},"to":{"change":3,"start":3543,"end":3562},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3543},"to":{"change":3,"start":3543,"end":3562},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" cctkGH->cctk_ash[d] = grid.ash[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14628"}}],"del_contents":[{"Del":{"text":" cctkGH->cctk_ash[d] = fbx[orient(d, 1)] - fbx[orient(d, 0)] + 1;","pos":"AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC:653"}},{"Del":{"text":"","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:3543"}},{"Del":{"text":" // Local extent","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:3561"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":310,"ins":{"up_context":[{"change":3,"pos":1816}],"down_context":[{"change":3,"pos":1817}],"flag":"BLOCK","start":14630,"end":14712,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1816},"to":{"change":3,"start":9676,"end":9768},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" cctkGH->cctk_lbnd[d] = grid.lbnd[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14670"}},{"Add":{"text":" cctkGH->cctk_ubnd[d] = grid.ubnd[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14711"}}],"del_contents":[{"Del":{"text":" cctkGH->cctk_lbnd[d] = gbx[orient(d, 0)];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:9721"}},{"Del":{"text":" cctkGH->cctk_ubnd[d] = gbx[orient(d, 1)];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:9767"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":313,"atom":{"EdgeMap":{"edges":[{"previous":"","flag":"DELETED","from":{"change":3,"pos":1821},"to":{"change":3,"start":3716,"end":3733},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3716},"to":{"change":3,"start":3716,"end":3733},"introduced_by":3}],"inode":{"change":3,"pos":531}}},"contents":[{"Del":{"text":"","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:3716"}},{"Del":{"text":" // Boundaries","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:3732"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":315,"ins":{"up_context":[{"change":3,"pos":3797}],"down_context":[{"change":3,"pos":731}],"flag":"BLOCK","start":14713,"end":14891,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3797},"to":{"change":3,"start":9769,"end":9845},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" cctkGH->cctk_bbox[2 * d + f] = grid.bbox[2 * d + f];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14771"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14772"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14806"}},{"Add":{"text":" tilebox.tile_min[d] = grid.tmin[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14846"}},{"Add":{"text":" tilebox.tile_max[d] = grid.tmax[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14886"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14890"}}],"del_contents":[{"Del":{"text":" cctkGH->cctk_bbox[2 * d + f] = bx[orient(d, f)] == gbx[orient(d, f)];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:9844"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":323,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":760},"to":{"change":3,"start":9846,"end":9879},"introduced_by":3}],"inode":{"change":3,"pos":531}}},"contents":[{"Del":{"text":" const Dim3 imin = lbound(gbx);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:9878"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":327,"ins":{"up_context":[{"change":3,"pos":4374}],"down_context":[{"change":3,"pos":1637}],"flag":"BLOCK","start":14892,"end":14969,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4374},"to":{"change":3,"start":4374,"end":4481},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" cctkGH->data[groupdata.firstvarindex + vi][tl] = grid.ptr(vars, vi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14968"}}],"del_contents":[{"Del":{"text":" cctkGH->data[groupdata.firstvarindex + vi][tl] =","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:4430"}},{"Del":{"text":" vars.ptr(imin.x, imin.y, imin.z, vi);","pos":"VAF66DTVLDWNG7N2PEQYEH4OH5SPSMFBXKPR2PU67IIM6CVPCJ7AC:4480"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":331,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":1685}],"down_context":[{"change":3,"pos":3873}],"flag":"BLOCK","start":14970,"end":15783,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14970"}},{"Add":{"text":" // Check constraints","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:14993"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15027"}},{"Add":{"text":" // Domain size","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15046"}},{"Add":{"text":" assert(cctkGH->cctk_gsh[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15084"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15085"}},{"Add":{"text":" // Local size","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15103"}},{"Add":{"text":" assert(cctkGH->cctk_lbnd[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15142"}},{"Add":{"text":" assert(cctkGH->cctk_lsh[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15180"}},{"Add":{"text":" assert(cctkGH->cctk_lbnd[d] + cctkGH->cctk_lsh[d] <= cctkGH->cctk_gsh[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15259"}},{"Add":{"text":" assert(cctkGH->cctk_ubnd[d] ==","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15294"}},{"Add":{"text":" cctkGH->cctk_lbnd[d] + cctkGH->cctk_lsh[d] - 1);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15354"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15355"}},{"Add":{"text":" // Internal representation","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15386"}},{"Add":{"text":" assert(cctkGH->cctk_ash[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15424"}},{"Add":{"text":" assert(cctkGH->cctk_ash[d] >= cctkGH->cctk_lsh[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15480"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15481"}},{"Add":{"text":" // Ghost zones","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15500"}},{"Add":{"text":" assert(cctkGH->cctk_nghostzones[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15546"}},{"Add":{"text":" assert(2 * cctkGH->cctk_nghostzones[d] <= cctkGH->cctk_lsh[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15614"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15615"}},{"Add":{"text":" // Tiles","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15628"}},{"Add":{"text":" assert(tilebox.tile_min[d] >= 0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15666"}},{"Add":{"text":" assert(tilebox.tile_max[d] >= tilebox.tile_min[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15722"}},{"Add":{"text":" assert(tilebox.tile_max[d] <= cctkGH->cctk_lsh[d]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15778"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15782"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":358,"ins":{"up_context":[{"change":3,"pos":3875}],"down_context":[{"change":3,"pos":2531}],"flag":"BLOCK","start":15784,"end":15855,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3875},"to":{"change":3,"start":2487,"end":2531},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":"void leave_local_mode(cGH *restrict cctkGH, TileBox &restrict tilebox,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15854"}}],"del_contents":[{"Del":{"text":"void leave_local_mode(cGH *restrict cctkGH,","pos":"2DD222JSYRPHTXKSRXLSOMSCQPZUORNFLLO2P3GMIDELAAMD5MEQC:2530"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":372,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":1200}],"down_context":[{"change":3,"pos":2598}],"flag":"BLOCK","start":15856,"end":15968,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15889"}},{"Add":{"text":" tilebox.tile_min[d] = undefined;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15926"}},{"Add":{"text":" tilebox.tile_max[d] = undefined;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15963"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:15967"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":383,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":4061}],"down_context":[{"change":3,"pos":4061}],"flag":"BLOCK","start":15969,"end":16512,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":"extern \"C\" void AMReX_GetTileExtent(const void *restrict cctkGH_,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16034"}},{"Add":{"text":" CCTK_INT *restrict tile_min,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16099"}},{"Add":{"text":" CCTK_INT *restrict tile_max) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16166"}},{"Add":{"text":" const cGH *restrict cctkGH = static_cast(cctkGH_);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16232"}},{"Add":{"text":" // Check whether we are in local mode","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16272"}},{"Add":{"text":" assert(cctkGH->cctk_bbox[0] != undefined);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16317"}},{"Add":{"text":" int thread_num = omp_get_thread_num();","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16358"}},{"Add":{"text":" const cGH *restrict threadGH = &thread_local_cctkGH.at(thread_num);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16428"}},{"Add":{"text":" // Check whether this is the correct cGH structure","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16481"}},{"Add":{"text":" assert(cctkGH == threadGH);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16511"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":394,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":4062}],"down_context":[{"change":3,"pos":4062}],"flag":"BLOCK","start":16513,"end":16705,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":" const TileBox &restrict tilebox = thread_local_tilebox.at(thread_num);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16585"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16619"}},{"Add":{"text":" tile_min[d] = tilebox.tile_min[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16658"}},{"Add":{"text":" tile_max[d] = tilebox.tile_max[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16697"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16701"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16703"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16704"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":441,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1678},"to":{"change":3,"start":3044,"end":3075},"introduced_by":3}],"inode":{"change":3,"pos":531}}},"contents":[{"Del":{"text":" // enter_level_mode(cctkGH);","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:3074"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":443,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":1792}],"down_context":[{"change":3,"pos":1792}],"flag":"BLOCK","start":16706,"end":16750,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":" thread_local_tilebox.resize(max_threads);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16749"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":449,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1988},"to":{"change":3,"start":3076,"end":3111},"introduced_by":3}],"inode":{"change":3,"pos":531}}},"contents":[{"Del":{"text":" // enter_level_mode(threadGH);","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:3110"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":502,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":5101},"to":{"change":3,"start":7422,"end":7526},"introduced_by":3}],"inode":{"change":3,"pos":531}}},"contents":[{"Del":{"text":" // TODO: Remove \"current_level\" mechanism","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:7469"}},{"Del":{"text":" // current_level = ghext->amrcore->finestLevel();","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:7525"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":515,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":5624}],"down_context":[{"change":3,"pos":5817}],"flag":"BLOCK","start":16751,"end":16752,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16751"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":520,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":5910}],"down_context":[{"change":3,"pos":6033}],"flag":"BLOCK","start":16753,"end":16809,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16753"}},{"Add":{"text":" CCTK_Traverse(cctkGH, \"CCTK_POSTREGRIDINITIAL\");","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16808"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":523,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6039},"to":{"change":3,"start":7672,"end":7699},"introduced_by":3}],"inode":{"change":3,"pos":531}}},"contents":[{"Del":{"text":" // current_level = -1;","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:7698"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":616,"ins":{"up_context":[{"change":3,"pos":7805}],"down_context":[{"change":3,"pos":7879}],"flag":"BLOCK","start":16810,"end":16926,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":7805},"to":{"change":3,"start":7805,"end":7879},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" if (regrid_every > 0 && cctkGH->cctk_iteration % regrid_every == 0 &&","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16883"}},{"Add":{"text":" ghext->amrcore->maxLevel() > 0) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16925"}}],"del_contents":[{"Del":{"text":" if (regrid_every > 0 && cctkGH->cctk_iteration % regrid_every == 0) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:7878"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":627,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":8275}],"down_context":[{"change":3,"pos":8275}],"flag":"BLOCK","start":16927,"end":16975,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":" CCTK_Traverse(cctkGH, \"CCTK_POSTREGRID\");","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:16974"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":674,"ins":{"up_context":[{"change":3,"pos":10492}],"down_context":[{"change":3,"pos":10563}],"flag":"BLOCK","start":16976,"end":17055,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":10492},"to":{"change":3,"start":10492,"end":10563},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" CCTK_VINFO(\"CallFunction iteration %d %s: %s::%s\", cctkGH->cctk_iteration,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17054"}}],"del_contents":[{"Del":{"text":" CCTK_VINFO(\"CallFunction [%d] %s: %s::%s\", cctkGH->cctk_iteration,","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:10562"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":683,"ins":{"up_context":[{"change":3,"pos":2112}],"down_context":[{"change":3,"pos":2190}],"flag":"BLOCK","start":17056,"end":17169,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2112},"to":{"change":3,"start":2112,"end":2190},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" int thread_num = omp_get_thread_num();","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17100"}},{"Add":{"text":" cGH *restrict threadGH = &thread_local_cctkGH.at(thread_num);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17168"}}],"del_contents":[{"Del":{"text":" cGH *restrict threadGH = &thread_local_cctkGH.at(omp_get_thread_num());","pos":"PQB3EKQ6MBCXPTW4HB7SGMSTOTYMB3EFZX2573OFCQI6PSOEKCSQC:2189"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":686,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":2229}],"down_context":[{"change":3,"pos":6107}],"flag":"BLOCK","start":17170,"end":17248,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":" TileBox &restrict thread_tilebox = thread_local_tilebox.at(thread_num);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17247"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":688,"ins":{"up_context":[{"change":3,"pos":6108}],"down_context":[{"change":3,"pos":2828}],"flag":"BLOCK","start":17249,"end":17374,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6108},"to":{"change":3,"start":6108,"end":6162},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" // Loop over all levels","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17278"}},{"Add":{"text":" // TODO: parallelize this loop","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17315"}},{"Add":{"text":" for (auto &restrict leveldata : ghext->leveldata) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17373"}}],"del_contents":[{"Del":{"text":" auto callfunc = [&](auto &restrict leveldata) {","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:6161"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":696,"ins":{"up_context":[{"change":3,"pos":3778}],"down_context":[{"change":3,"pos":3828}],"flag":"BLOCK","start":17375,"end":17445,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3778},"to":{"change":3,"start":2940,"end":2994},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" enter_local_mode(threadGH, thread_tilebox, leveldata, mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17444"}}],"del_contents":[{"Del":{"text":" enter_local_mode(threadGH, leveldata, mfi);","pos":"2DD222JSYRPHTXKSRXLSOMSCQPZUORNFLLO2P3GMIDELAAMD5MEQC:2993"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":698,"ins":{"up_context":[{"change":3,"pos":3888}],"down_context":[{"change":3,"pos":3938}],"flag":"BLOCK","start":17446,"end":17516,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3888},"to":{"change":3,"start":2995,"end":3049},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" leave_local_mode(threadGH, thread_tilebox, leveldata, mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17515"}}],"del_contents":[{"Del":{"text":" leave_local_mode(threadGH, leveldata, mfi);","pos":"2DD222JSYRPHTXKSRXLSOMSCQPZUORNFLLO2P3GMIDELAAMD5MEQC:3048"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":701,"ins":{"up_context":[{"change":3,"pos":3097}],"down_context":[{"change":3,"pos":5558}],"flag":"BLOCK","start":17517,"end":17525,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3097},"to":{"change":3,"start":6163,"end":6173},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6173},"to":{"change":3,"start":8283,"end":8406},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":8406},"to":{"change":3,"start":6486,"end":6515},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6486},"to":{"change":3,"start":6486,"end":6515},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17524"}}],"del_contents":[{"Del":{"text":" };","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:6171"}},{"Del":{"text":"","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:6172"}},{"Del":{"text":" // Loop over all levels","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:8312"}},{"Del":{"text":" // TODO: parallelize this loop","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:8349"}},{"Del":{"text":" for (auto &restrict leveldata : ghext->leveldata)","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:8405"}},{"Del":{"text":" callfunc(leveldata);","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:6514"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":730,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":267}],"down_context":[{"change":3,"pos":267}],"flag":"BLOCK","start":17526,"end":17774,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17526"}},{"Add":{"text":" if (verbose) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17543"}},{"Add":{"text":" ostringstream buf;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17566"}},{"Add":{"text":" for (int n = 0; n < numgroups; ++n) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17608"}},{"Add":{"text":" if (n != 0)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17626"}},{"Add":{"text":" buf << \", \";","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17647"}},{"Add":{"text":" buf << unique_ptr(CCTK_GroupName(groups[n])).get();","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17711"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17717"}},{"Add":{"text":" CCTK_VINFO(\"SyncGroups %s\", buf.str().c_str());","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17769"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17773"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":778,"ins":{"up_context":[{"change":3,"pos":1461}],"down_context":[{"change":3,"pos":11380}],"flag":"BLOCK","start":17775,"end":17820,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1461},"to":{"change":3,"start":10991,"end":11038},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":11339},"to":{"change":3,"start":11339,"end":11380},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" for (int tl = 0; tl < sync_tl; ++tl)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17819"}}],"del_contents":[{"Del":{"text":" for (int tl = 0; tl < sync_tl; ++tl) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:11037"}},{"Del":{"text":"#warning \"TODO: make copy of fine level\"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:11379"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":784,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":11721},"to":{"change":3,"start":11721,"end":11731},"introduced_by":3}],"inode":{"change":3,"pos":531}}},"contents":[{"Del":{"text":" }","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:11730"}}]}},{"Edit":{"inode":{"change":3,"pos":5992},"path":"AMReX/src/schedule.hxx","line":4,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":6036}],"down_context":[{"change":3,"pos":6036}],"flag":"BLOCK","start":17821,"end":17864,"inode":{"change":3,"pos":5992}}},"contents":[{"Add":{"text":"#include \"driver.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17842"}},{"Add":{"text":"#include \"loop.hxx\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17862"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17863"}}]}},{"Edit":{"inode":{"change":3,"pos":5992},"path":"AMReX/src/schedule.hxx","line":10,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":6082}],"down_context":[{"change":3,"pos":6082}],"flag":"BLOCK","start":17865,"end":17904,"inode":{"change":3,"pos":5992}}},"contents":[{"Add":{"text":"#include ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17885"}},{"Add":{"text":"#include ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17902"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17903"}}]}},{"Edit":{"inode":{"change":3,"pos":5992},"path":"AMReX/src/schedule.hxx","line":14,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":6100}],"down_context":[{"change":3,"pos":6337}],"flag":"BLOCK","start":17905,"end":17980,"inode":{"change":3,"pos":5992}}},"contents":[{"Add":{"text":"using namespace Loop;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17926"}},{"Add":{"text":"using namespace std;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17947"}},{"Add":{"text":"using std::max;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17963"}},{"Add":{"text":"using std::min;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17979"}}]}},{"Edit":{"inode":{"change":3,"pos":5992},"path":"AMReX/src/schedule.hxx","line":27,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":6506}],"down_context":[{"change":3,"pos":6506}],"flag":"BLOCK","start":17981,"end":18749,"inode":{"change":3,"pos":5992}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:17981"}},{"Add":{"text":"////////////////////////////////////////////////////////////////////////////////","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18062"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18063"}},{"Add":{"text":"struct GridDesc : GridDescBase {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18096"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18097"}},{"Add":{"text":" GridDesc() = delete;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18120"}},{"Add":{"text":" GridDesc(const GHExt::LevelData &leveldata, const MFIter &mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18186"}},{"Add":{"text":" GridDesc(const cGH *cctkGH) : GridDescBase(cctkGH) {}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18242"}},{"Add":{"text":"};","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18245"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18246"}},{"Add":{"text":"struct GridPtrDesc : GridDesc {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18278"}},{"Add":{"text":" Dim3 cactus_offset;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18300"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18301"}},{"Add":{"text":" GridPtrDesc() = delete;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18327"}},{"Add":{"text":" GridPtrDesc(const GHExt::LevelData &leveldata, const MFIter &mfi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18396"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18397"}},{"Add":{"text":" template T *ptr(const Array4 &vars, int vi) const {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18467"}},{"Add":{"text":" return vars.ptr(cactus_offset.x, cactus_offset.y, cactus_offset.z, vi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18543"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18547"}},{"Add":{"text":" template ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18571"}},{"Add":{"text":" T &idx(const Array4 &vars, int i, int j, int k, int vi) const {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18640"}},{"Add":{"text":" return vars(cactus_offset.x + i, cactus_offset.y + i, cactus_offset.z + j,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18719"}},{"Add":{"text":" vi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18740"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18744"}},{"Add":{"text":"};","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18747"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18748"}}]}},{"Edit":{"inode":{"change":3,"pos":14802},"path":"WaveToyAMReX/README","line":34,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":9097}],"down_context":[],"flag":"BLOCK","start":18750,"end":19054,"inode":{"change":3,"pos":14802}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18750"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18751"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18752"}},{"Add":{"text":"3. Scalar particles","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18772"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18773"}},{"Add":{"text":"Lagrangian:","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18785"}},{"Add":{"text":" S = int 1/2 \\eta^ab d_a u d_b u + 1/2 m^2 u^2 + \\rho u","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18842"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18843"}},{"Add":{"text":"equation of motion:","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18863"}},{"Add":{"text":" 0 = dS/du = - \\eta^ab d_a d_b u + m^2 u + \\rho","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18912"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18913"}},{"Add":{"text":"nonsense: [0 = dS/d\\rho = u]","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18942"}},{"Add":{"text":"nonsense: [0 = dS/dm = m u^2]","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18972"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18973"}},{"Add":{"text":"Ansatz:","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:18981"}},{"Add":{"text":" \\rho = q \\delta(x)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19002"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19003"}},{"Add":{"text":" 0 = dS/dx = -q (grad u)(x)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19032"}},{"Add":{"text":" 0 = dS/dq = u(x)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19051"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19052"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19053"}}]}},{"Edit":{"inode":{"change":3,"pos":10196},"path":"WaveToyAMReX/interface.ccl","line":6,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":6533}],"down_context":[{"change":3,"pos":1523}],"flag":"BLOCK","start":19055,"end":19088,"inode":{"change":3,"pos":10196}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19055"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19056"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19057"}},{"Add":{"text":"USES INCLUDE HEADER: loop.hxx","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19087"}}]}},{"Edit":{"inode":{"change":3,"pos":10131},"path":"WaveToyAMReX/param.ccl","line":2,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":10179}],"down_context":[{"change":3,"pos":9187}],"flag":"BLOCK","start":19089,"end":19319,"inode":{"change":3,"pos":10131}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19089"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19090"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19091"}},{"Add":{"text":"CCTK_REAL mass \"Scalar field mass\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19126"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19128"}},{"Add":{"text":" 0:* :: \"\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19140"}},{"Add":{"text":"} 0.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19146"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19147"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19148"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19149"}},{"Add":{"text":"CCTK_REAL central_point_charge \"Scalar piont charge located at origin\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19220"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19222"}},{"Add":{"text":" *:* :: \"\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19234"}},{"Add":{"text":"} 0.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19240"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19241"}},{"Add":{"text":"CCTK_REAL central_point_radius \"Radius of point charge\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19297"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19299"}},{"Add":{"text":" (*:* :: \"\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19312"}},{"Add":{"text":"} 1.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19318"}}]}},{"Edit":{"inode":{"change":3,"pos":10131},"path":"WaveToyAMReX/param.ccl","line":22,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":9188}],"down_context":[{"change":3,"pos":9188}],"flag":"BLOCK","start":19320,"end":19322,"inode":{"change":3,"pos":10131}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19320"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19321"}}]}},{"Edit":{"inode":{"change":3,"pos":10131},"path":"WaveToyAMReX/param.ccl","line":28,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":9288}],"down_context":[{"change":3,"pos":9288}],"flag":"BLOCK","start":19323,"end":19370,"inode":{"change":3,"pos":10131}}},"contents":[{"Add":{"text":" \"Gaussian\" :: \"\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19341"}},{"Add":{"text":" \"central potential\" :: \"\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19369"}}]}},{"Edit":{"inode":{"change":3,"pos":10131},"path":"WaveToyAMReX/param.ccl","line":51,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":9567}],"down_context":[{"change":3,"pos":9567}],"flag":"BLOCK","start":19371,"end":19466,"inode":{"change":3,"pos":10131}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19371"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19372"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19373"}},{"Add":{"text":"KEYWORD boundary_condition \"Boundary condition\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19421"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19423"}},{"Add":{"text":" \"none\" :: \"\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19438"}},{"Add":{"text":" \"initial\" :: \"\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19456"}},{"Add":{"text":"} \"none\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19465"}}]}},{"Edit":{"inode":{"change":3,"pos":10131},"path":"WaveToyAMReX/param.ccl","line":66,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":9679}],"down_context":[],"flag":"BLOCK","start":19467,"end":19577,"inode":{"change":3,"pos":10131}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19467"}},{"Add":{"text":"CCTK_REAL psi_abs \"Typical value of psi to determine absolute error\" STEERABLE=always","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19553"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19555"}},{"Add":{"text":" (0.0:* :: \"\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19570"}},{"Add":{"text":"} 1.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19576"}}]}},{"Edit":{"inode":{"change":3,"pos":9594},"path":"WaveToyAMReX/schedule.ccl","line":4,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":9768}],"down_context":[{"change":3,"pos":9768}],"flag":"BLOCK","start":19578,"end":19711,"inode":{"change":3,"pos":9594}}},"contents":[{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19579"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19589"}},{"Add":{"text":"} \"Set up initial conditions for the wave equation\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19641"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19642"}},{"Add":{"text":"SCHEDULE WaveToyAMReX_Sync AT initial AFTER WaveToyAMReX_Initialize","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19710"}}]}},{"Replacement":{"inode":{"change":3,"pos":9594},"path":"WaveToyAMReX/schedule.ccl","line":12,"ins":{"up_context":[{"change":3,"pos":810}],"down_context":[{"change":3,"pos":1889}],"flag":"BLOCK","start":19712,"end":19991,"inode":{"change":3,"pos":9594}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":3,"pos":810},"to":{"change":3,"start":9780,"end":9832},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":9780},"to":{"change":3,"start":9780,"end":9832},"introduced_by":3}],"inode":{"change":3,"pos":9594}},"ins_contents":[{"Add":{"text":"} \"Boundary conditions for the wave equation\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19757"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19758"}},{"Add":{"text":"SCHEDULE WaveToyAMReX_Boundaries AT initial AFTER WaveToyAMReX_Sync","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19826"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19828"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19838"}},{"Add":{"text":"} \"Boundary conditions for the wave equation\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19884"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19885"}},{"Add":{"text":"SCHEDULE WaveToyAMReX_NaNCheck_current AT postinitial","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19939"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19941"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19951"}},{"Add":{"text":"} \"Check for nans in the state vector\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:19990"}}],"del_contents":[{"Del":{"text":"} \"Set up 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postregridinitial AFTER WaveToyAMReX_Boundaries","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20338"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20340"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20350"}},{"Add":{"text":"} \"Check for nans in the state vector\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20389"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20390"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20391"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20392"}},{"Add":{"text":"SCHEDULE WaveToyAMReX_Sync AT postregrid","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20433"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20435"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20445"}},{"Add":{"text":" SYNC: phi","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20457"}},{"Add":{"text":"} \"Boundary conditions for the wave equation\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20503"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20504"}},{"Add":{"text":"SCHEDULE WaveToyAMReX_Boundaries AT postregrid AFTER WaveToyAMReX_Sync","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20575"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20577"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20587"}},{"Add":{"text":"} \"Boundary conditions for the wave equation\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20633"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20634"}},{"Add":{"text":"SCHEDULE WaveToyAMReX_NaNCheck_current AT postregrid AFTER WaveToyAMReX_Boundaries","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20717"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20719"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20729"}},{"Add":{"text":"} \"Check for nans in the state vector\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20768"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20769"}},{"Add":{"text":"SCHEDULE WaveToyAMReX_NaNCheck_past AT prestep","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20816"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20818"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20828"}},{"Add":{"text":"} \"Check for nans in the state vector\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20867"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20868"}}]}},{"Edit":{"inode":{"change":3,"pos":9594},"path":"WaveToyAMReX/schedule.ccl","line":71,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":9882}],"down_context":[{"change":3,"pos":811}],"flag":"BLOCK","start":20870,"end":20973,"inode":{"change":3,"pos":9594}}},"contents":[{"Add":{"text":"} \"Evolve the wave equation\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20898"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20899"}},{"Add":{"text":"SCHEDULE WaveToyAMReX_Sync AT evol AFTER WaveToyAMReX_Evolve","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20960"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20962"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:20972"}}]}},{"Replacement":{"inode":{"change":3,"pos":9594},"path":"WaveToyAMReX/schedule.ccl","line":77,"ins":{"up_context":[{"change":3,"pos":823}],"down_context":[{"change":3,"pos":12710}],"flag":"BLOCK","start":20974,"end":21144,"inode":{"change":3,"pos":9594}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":3,"pos":823},"to":{"change":3,"start":9882,"end":9911},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":9882},"to":{"change":3,"start":9882,"end":9911},"introduced_by":3}],"inode":{"change":3,"pos":9594}},"ins_contents":[{"Add":{"text":"} \"Boundary conditions for the wave equation\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21019"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21020"}},{"Add":{"text":"SCHEDULE WaveToyAMReX_Boundaries AT evol AFTER WaveToyAMReX_Sync","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21085"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21087"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21097"}},{"Add":{"text":"} \"Boundary conditions for the wave equation\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21143"}}],"del_contents":[{"Del":{"text":"} \"Evolve the wave equation\"","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:9910"}}]}},{"Edit":{"inode":{"change":3,"pos":9594},"path":"WaveToyAMReX/schedule.ccl","line":84,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":12711}],"down_context":[{"change":3,"pos":9792}],"flag":"BLOCK","start":21145,"end":21248,"inode":{"change":3,"pos":9594}}},"contents":[{"Add":{"text":"SCHEDULE WaveToyAMReX_NaNCheck_current AT poststep","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21195"}},{"Add":{"text":"{","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21197"}},{"Add":{"text":" LANG: C","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21207"}},{"Add":{"text":"} \"Check for nans in the state 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","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21273"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":21,"ins":{"up_context":[{"change":3,"pos":498}],"down_context":[{"change":3,"pos":12852}],"flag":"BLOCK","start":21275,"end":22059,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":498},"to":{"change":3,"start":498,"end":559},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":"// Spline with compact support of radius 1 and volume 1","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21330"}},{"Add":{"text":"template T spline(T r) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21368"}},{"Add":{"text":" if (r >= 1.0)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21384"}},{"Add":{"text":" return 0.0;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21400"}},{"Add":{"text":" constexpr CCTK_REAL f =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21426"}},{"Add":{"text":" dim == 1 ? 1.0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21447"}},{"Add":{"text":" : dim == 2 ? 24.0 / 7.0 / M_PI : dim == 3 ? 4.0 / M_PI : -1;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21523"}},{"Add":{"text":" const T r2 = pow(r, 2);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21549"}},{"Add":{"text":" return f * (r <= 0.5 ? 1 - 2 * r2 : 2 + r * (-4 + 2 * r));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21610"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21612"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21613"}},{"Add":{"text":"// The potential for the spline","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21645"}},{"Add":{"text":"template T spline_potential(T r) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21693"}},{"Add":{"text":" // \\Laplace u = 4 \\pi \\rho","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21722"}},{"Add":{"text":" if (r >= 1.0)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21738"}},{"Add":{"text":" return -1 / r;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21757"}},{"Add":{"text":" static_assert(dim == 3, \"\");","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21788"}},{"Add":{"text":" const T r2 = pow(r, 2);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21814"}},{"Add":{"text":" return r <= 0.5","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21832"}},{"Add":{"text":" ? -7 / T(3) + r2 * (8 / T(3) - 8 / T(5) * r2)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21891"}},{"Add":{"text":" : (1 / T(15) +","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21919"}},{"Add":{"text":" r * (-40 / T(15) +","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:21954"}},{"Add":{"text":" r2 * (80 / T(15) + r * (-80 / T(15) + r * 24 / T(15))))) /","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22034"}},{"Add":{"text":" r;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22056"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22058"}}],"del_contents":[{"Del":{"text":"// Square","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:507"}},{"Del":{"text":"template T sqr(T x) { return x * x; }","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:558"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":53,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":13095}],"down_context":[{"change":3,"pos":559}],"flag":"BLOCK","start":22060,"end":22142,"inode":{"change":3,"pos":37}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22060"}},{"Add":{"text":"////////////////////////////////////////////////////////////////////////////////","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22141"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":62,"ins":{"up_context":[{"change":3,"pos":10081}],"down_context":[{"change":3,"pos":771}],"flag":"BLOCK","start":22143,"end":22199,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":3,"pos":13199},"to":{"change":3,"start":724,"end":771},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":10081},"to":{"change":3,"start":724,"end":771},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":724},"to":{"change":3,"start":724,"end":771},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" T omega = sqrt(pow(kx, 2) + pow(ky, 2) + pow(kz, 2));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22198"}}],"del_contents":[{"Del":{"text":" T omega = sqrt(sqr(kx) + sqr(ky) + sqr(kz));","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:770"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":66,"ins":{"up_context":[{"change":3,"pos":2035}],"down_context":[{"change":3,"pos":10154}],"flag":"BLOCK","start":22200,"end":22285,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2035},"to":{"change":3,"start":10082,"end":10154},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":"// Periodic Gaussian","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22220"}},{"Add":{"text":"template T periodic_gaussian(T t, T x, T y, T z) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22284"}}],"del_contents":[{"Del":{"text":"// Standing wave","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10098"}},{"Del":{"text":"template T gaussian(T t, T x, T y, T z) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10153"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":72,"ins":{"up_context":[{"change":3,"pos":10292}],"down_context":[{"change":3,"pos":10416}],"flag":"BLOCK","start":22286,"end":22865,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":10292},"to":{"change":3,"start":10292,"end":10416},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" T omega = sqrt(pow(kx, 2) + pow(ky, 2) + pow(kz, 2));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22341"}},{"Add":{"text":" return exp(-0.5 * pow(sin(kx * x + ky * y + kz * z - omega * t) / width, 2));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22421"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22423"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22424"}},{"Add":{"text":"// Gaussian","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22436"}},{"Add":{"text":"template T gaussian(T t, T x, T y, T z) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22491"}},{"Add":{"text":" DECLARE_CCTK_PARAMETERS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22518"}},{"Add":{"text":" // u(t,r) = (f(r-t) - f(r+t)) / r","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22554"}},{"Add":{"text":" T r = sqrt(pow(x, 2) + pow(y, 2) + pow(z, 2));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22603"}},{"Add":{"text":" auto f = [&](T x) { return exp(-0.5 * pow(x / width, 2)); };","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22666"}},{"Add":{"text":" auto fx = [&](T x) { return -x / pow(width, 2) * f(x); };","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22726"}},{"Add":{"text":" if (r < 1.0e-8)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22744"}},{"Add":{"text":" // Use L'Hôpital's rule for small r","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22785"}},{"Add":{"text":" return fx(r - t) - fx(r + t);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22819"}},{"Add":{"text":" else","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22826"}},{"Add":{"text":" return (f(r - t) - f(r + t)) / r;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22864"}}],"del_contents":[{"Del":{"text":" T omega = sqrt(sqr(kx) + sqr(ky) + sqr(kz));","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10338"}},{"Del":{"text":" return exp(-0.5 * sqr(sin(kx * x + ky * y + kz * z - omega * t) / width));","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10415"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":90,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":10419}],"down_context":[{"change":3,"pos":2035}],"flag":"BLOCK","start":22866,"end":23149,"inode":{"change":3,"pos":37}}},"contents":[{"Add":{"text":"// Central potential","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22886"}},{"Add":{"text":"template T central_potential(T t, T x, T y, T z) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22950"}},{"Add":{"text":" DECLARE_CCTK_PARAMETERS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:22977"}},{"Add":{"text":" T r = sqrt(pow(x, 2) + pow(y, 2) + pow(z, 2));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23026"}},{"Add":{"text":" return central_point_charge * pow(central_point_radius, -dim) *","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23092"}},{"Add":{"text":" spline_potential(r / central_point_radius);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23145"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23147"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23148"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":112,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4712},"to":{"change":3,"start":13200,"end":13403},"introduced_by":3}],"inode":{"change":3,"pos":37}}},"contents":[{"Del":{"text":" int imin[dim], imax[dim];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:13227"}},{"Del":{"text":" for (int d = 0; d < dim; ++d) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:13261"}},{"Del":{"text":" imin[d] = cctk_bbox[2 * d] ? 0 : cctk_nghostzones[d];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:13319"}},{"Del":{"text":" imax[d] = cctk_lsh[d] - (cctk_bbox[2 * d + 1] ? 0 : cctk_nghostzones[d]);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:13397"}},{"Del":{"text":" }","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:13401"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:13402"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":114,"ins":{"up_context":[{"change":3,"pos":10478}],"down_context":[{"change":3,"pos":11040}],"flag":"BLOCK","start":23150,"end":23531,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":10478},"to":{"change":3,"start":10478,"end":10572},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":2607},"to":{"change":3,"start":4979,"end":4996},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":3330},"to":{"change":3,"start":4979,"end":4996},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":13493},"to":{"change":3,"start":4979,"end":4996},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":10572},"to":{"change":3,"start":4979,"end":4996},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":2912},"to":{"change":3,"start":4979,"end":4996},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4979},"to":{"change":3,"start":4979,"end":4996},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4996},"to":{"change":3,"start":10573,"end":11040},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" Loop::loop_int(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23212"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23268"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23324"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23380"}},{"Add":{"text":" phi[idx] = standing(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23419"}},{"Add":{"text":" // phi_p[idx] = standing(t - dt, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23468"}},{"Add":{"text":" psi[idx] = timederiv(standing, dt)(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23522"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23530"}}],"del_contents":[{"Del":{"text":" for (int k = imin[2]; k < imax[2]; ++k) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10523"}},{"Del":{"text":" for (int j = imin[1]; j < imax[1]; ++j) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10571"}},{"Del":{"text":"#pragma omp simd","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:4995"}},{"Del":{"text":" for (int i = imin[0]; i < imax[0]; ++i) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10622"}},{"Del":{"text":" const int idx = CCTK_GFINDEX3D(cctkGH, i, j, k);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10681"}},{"Del":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10741"}},{"Del":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10801"}},{"Del":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10861"}},{"Del":{"text":" phi[idx] = standing(t, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10904"}},{"Del":{"text":" // phi_p[idx] = standing(t - dt, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:10957"}},{"Del":{"text":" psi[idx] = timederiv(standing, dt)(t, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11015"}},{"Del":{"text":" }","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11025"}},{"Del":{"text":" }","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11033"}},{"Del":{"text":" }","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11039"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":125,"ins":{"up_context":[{"change":3,"pos":11110}],"down_context":[{"change":3,"pos":11675}],"flag":"BLOCK","start":23532,"end":24860,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":11110},"to":{"change":3,"start":11110,"end":11674},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":13602},"to":{"change":3,"start":3756,"end":3764},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":11674},"to":{"change":3,"start":3756,"end":3764},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":3279},"to":{"change":3,"start":3756,"end":3764},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3756},"to":{"change":3,"start":3756,"end":3764},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3764},"to":{"change":3,"start":2608,"end":2614},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" Loop::loop_int(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23594"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23650"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23706"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23762"}},{"Add":{"text":" phi[idx] = periodic_gaussian(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23810"}},{"Add":{"text":" // phi_p[idx] = periodic_gaussian(t - dt, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23868"}},{"Add":{"text":" psi[idx] = timederiv(periodic_gaussian, dt)(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23931"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23939"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23940"}},{"Add":{"text":" } else if (CCTK_EQUALS(initial_condition, \"Gaussian\")) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:23999"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24000"}},{"Add":{"text":" Loop::loop_int(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24063"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24119"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24175"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24231"}},{"Add":{"text":" phi[idx] = gaussian(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24270"}},{"Add":{"text":" // phi_p[idx] = gaussian(t - dt, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24319"}},{"Add":{"text":" psi[idx] = timederiv(gaussian, dt)(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24373"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24381"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24382"}},{"Add":{"text":" } else if (CCTK_EQUALS(initial_condition, \"central potential\")) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24450"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24451"}},{"Add":{"text":" Loop::loop_int(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24514"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24570"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24626"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24682"}},{"Add":{"text":" phi[idx] = central_potential(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24730"}},{"Add":{"text":" // phi_p[idx] = central_potential(t - dt, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24788"}},{"Add":{"text":" psi[idx] = timederiv(central_potential, dt)(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24851"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24859"}}],"del_contents":[{"Del":{"text":" for (int k = imin[2]; k < imax[2]; ++k) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11155"}},{"Del":{"text":" for (int j = imin[1]; j < imax[1]; ++j) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11203"}},{"Del":{"text":"#pragma omp simd","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11220"}},{"Del":{"text":" for (int i = imin[0]; i < imax[0]; ++i) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11270"}},{"Del":{"text":" const int idx = CCTK_GFINDEX3D(cctkGH, i, j, k);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11329"}},{"Del":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11389"}},{"Del":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11449"}},{"Del":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11509"}},{"Del":{"text":" phi[idx] = gaussian(t, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11552"}},{"Del":{"text":" // phi_p[idx] = gaussian(t - dt, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11605"}},{"Del":{"text":" psi[idx] = timederiv(gaussian, dt)(t, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11663"}},{"Del":{"text":" }","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11673"}},{"Del":{"text":" }","pos":"ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC:3763"}},{"Del":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2613"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":169,"ins":{"up_context":[{"change":3,"pos":6861}],"down_context":[{"change":3,"pos":7338}],"flag":"BLOCK","start":24861,"end":25997,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6861},"to":{"change":3,"start":6861,"end":7067},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":7067},"to":{"change":3,"start":11860,"end":12293},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":5802},"to":{"change":3,"start":7324,"end":7338},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":1327},"to":{"change":3,"start":7324,"end":7338},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":12293},"to":{"change":3,"start":7324,"end":7338},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":7324},"to":{"change":3,"start":7324,"end":7338},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" Loop::loop_int(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24921"}},{"Add":{"text":" CCTK_REAL base_phi = fabs(phi[idx]) + fabs(phi_abs);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:24978"}},{"Add":{"text":" CCTK_REAL errx_phi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25003"}},{"Add":{"text":" fabs(phi[idx - di] - 2 * phi[idx] + phi[idx + di]) / base_phi;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25074"}},{"Add":{"text":" CCTK_REAL erry_phi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25099"}},{"Add":{"text":" fabs(phi[idx - dj] - 2 * phi[idx] + phi[idx + dj]) / base_phi;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25170"}},{"Add":{"text":" CCTK_REAL errz_phi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25195"}},{"Add":{"text":" fabs(phi[idx - dk] - 2 * phi[idx] + phi[idx + dk]) / base_phi;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25266"}},{"Add":{"text":" CCTK_REAL base_psi = fabs(psi[idx]) + fabs(psi_abs);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25323"}},{"Add":{"text":" CCTK_REAL errx_psi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25348"}},{"Add":{"text":" fabs(psi[idx - di] - 2 * psi[idx] + psi[idx + di]) / base_psi;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25419"}},{"Add":{"text":" CCTK_REAL erry_psi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25444"}},{"Add":{"text":" fabs(psi[idx - dj] - 2 * psi[idx] + psi[idx + dj]) / base_psi;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25515"}},{"Add":{"text":" CCTK_REAL errz_psi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25540"}},{"Add":{"text":" fabs(psi[idx - dk] - 2 * psi[idx] + psi[idx + dk]) / base_psi;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25611"}},{"Add":{"text":" regrid_error[idx] =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25635"}},{"Add":{"text":" errx_phi + erry_phi + errz_phi + errx_psi + erry_psi + errz_psi;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25708"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25714"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25716"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25717"}},{"Add":{"text":"extern \"C\" void WaveToyAMReX_Evolve(CCTK_ARGUMENTS) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25771"}},{"Add":{"text":" DECLARE_CCTK_ARGUMENTS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25797"}},{"Add":{"text":" DECLARE_CCTK_PARAMETERS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25824"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25825"}},{"Add":{"text":" const CCTK_REAL dt = CCTK_DELTA_TIME;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25865"}},{"Add":{"text":" CCTK_REAL x0[dim], dx[dim];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25895"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25929"}},{"Add":{"text":" x0[d] = CCTK_ORIGIN_SPACE(d);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25963"}},{"Add":{"text":" dx[d] = CCTK_DELTA_SPACE(d);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25996"}}],"del_contents":[{"Del":{"text":" for (int k = 0; k < cctk_lsh[2]; ++k) {","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:6902"}},{"Del":{"text":" for (int j = 0; j < cctk_lsh[1]; ++j) {","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:6946"}},{"Del":{"text":"#pragma omp simd","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:6963"}},{"Del":{"text":" for (int i = 0; i < cctk_lsh[0]; ++i) {","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:7009"}},{"Del":{"text":" const int idx = CCTK_GFINDEX3D(cctkGH, i, j, k);","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:7066"}},{"Del":{"text":" CCTK_REAL base_phi = fabs(phi[idx]) + fabs(phi_abs);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11920"}},{"Del":{"text":" CCTK_REAL errx_phi =","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:11949"}},{"Del":{"text":" fabs(phi[idx - di] - 2 * phi[idx] + phi[idx + di]) / base_phi;","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12024"}},{"Del":{"text":" CCTK_REAL erry_phi =","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12053"}},{"Del":{"text":" fabs(phi[idx - dj] - 2 * phi[idx] + phi[idx + dj]) / base_phi;","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12128"}},{"Del":{"text":" CCTK_REAL errz_phi =","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12157"}},{"Del":{"text":" fabs(phi[idx - dk] - 2 * phi[idx] + phi[idx + dk]) / base_phi;","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12232"}},{"Del":{"text":" regrid_error[idx] = errx_phi + erry_phi + errz_phi;","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12292"}},{"Del":{"text":" }","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:7331"}},{"Del":{"text":" }","pos":"MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC:7337"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":199,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":7342}],"down_context":[{"change":3,"pos":7342}],"flag":"BLOCK","start":25998,"end":27124,"inode":{"change":3,"pos":37}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:25998"}},{"Add":{"text":" constexpr int di = 1;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26022"}},{"Add":{"text":" const int dj = di * cctk_ash[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26057"}},{"Add":{"text":" const int dk = dj * cctk_ash[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26092"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26093"}},{"Add":{"text":" Loop::loop_int(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26154"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26208"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26262"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26316"}},{"Add":{"text":" CCTK_REAL r = sqrt(pow(x, 2) + pow(y, 2) + pow(z, 2));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26375"}},{"Add":{"text":" CCTK_REAL ddx_phi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26399"}},{"Add":{"text":" (phi_p[idx - di] - 2 * phi_p[idx] + phi_p[idx + di]) / pow(dx[0], 2);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26477"}},{"Add":{"text":" CCTK_REAL ddy_phi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26501"}},{"Add":{"text":" (phi_p[idx - dj] - 2 * phi_p[idx] + phi_p[idx + dj]) / pow(dx[1], 2);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26579"}},{"Add":{"text":" CCTK_REAL ddz_phi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26603"}},{"Add":{"text":" (phi_p[idx - dk] - 2 * phi_p[idx] + phi_p[idx + dk]) / pow(dx[2], 2);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26681"}},{"Add":{"text":" // phi[idx] = 2 * phi_p[idx] - phi_p_p[idx] +","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26731"}},{"Add":{"text":" // pow(dt, 2) * (ddx_phi + ddy_phi + ddz_phi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26793"}},{"Add":{"text":" psi[idx] = psi_p[idx] +","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26821"}},{"Add":{"text":" dt * (ddx_phi + ddy_phi + ddz_phi - pow(mass, 2) * phi_p[idx] -","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26900"}},{"Add":{"text":" 4 * M_PI * central_point_charge *","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:26955"}},{"Add":{"text":" pow(central_point_radius, -dim) *","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27014"}},{"Add":{"text":" spline(r / central_point_radius));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27074"}},{"Add":{"text":" phi[idx] = phi_p[idx] + dt * psi[idx];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27117"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27123"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":226,"ins":{"up_context":[{"change":3,"pos":7345}],"down_context":[{"change":3,"pos":5506}],"flag":"BLOCK","start":27125,"end":29515,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":3,"pos":7345},"to":{"change":3,"start":5452,"end":5506},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":5452},"to":{"change":3,"start":5452,"end":5506},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":"// Miguel Alcubierre, Gabrielle Allen, Gerd Lanfermann","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27179"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27182"}},{"Add":{"text":"// Routines for applying radiation boundary conditions","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27237"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27240"}},{"Add":{"text":"// Taken from","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27254"}},{"Add":{"text":"// ","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27323"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27326"}},{"Add":{"text":"// The radiative boundary condition that is implemented is:","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27386"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27389"}},{"Add":{"text":"// f = f0 + u(r - v*t) / r + h(r + v*t) / r","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27441"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27444"}},{"Add":{"text":"// That is, I assume outgoing radial waves with a 1/r fall off, and","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27512"}},{"Add":{"text":"// the correct asymptotic value f0, plus I include the possibility of","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27582"}},{"Add":{"text":"// incoming waves as well (these incoming waves should be modeled","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27648"}},{"Add":{"text":"// somehow).","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27661"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27664"}},{"Add":{"text":"// The condition above leads to the differential equation:","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27723"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27726"}},{"Add":{"text":"// (x / r) d f + v d f + v x (f - f0) / r^2 = v x H / r^2","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27791"}},{"Add":{"text":"// i t i i i","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27849"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27852"}},{"Add":{"text":"// where x_i is the normal direction to the given boundaries, and H =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27922"}},{"Add":{"text":"// 2 dh(s)/ds.","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27937"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:27940"}},{"Add":{"text":"// So at a given boundary I only worry about derivatives in the normal","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28011"}},{"Add":{"text":"// direction. Notice that u(r-v*t) has dissapeared, but we still do","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28079"}},{"Add":{"text":"// not know the value of H.","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28107"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28110"}},{"Add":{"text":"// To get H what I do is the following: I evaluate the expression one","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28180"}},{"Add":{"text":"// point in from the boundary and solve for H there. We now need a way","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28251"}},{"Add":{"text":"// of extrapolation H to the boundary. For this I assume that H falls","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28321"}},{"Add":{"text":"// off as a power law:","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28344"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28347"}},{"Add":{"text":"// H = k/r**n => d H = - n H/r","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28384"}},{"Add":{"text":"// i","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28408"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28411"}},{"Add":{"text":"// The value of n is is defined by the parameter \"radpower\". If this","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28480"}},{"Add":{"text":"// parameter is negative, H is forced to be zero (this corresponds to","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28550"}},{"Add":{"text":"// pure outgoing waves and is the default).","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28594"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28597"}},{"Add":{"text":"// The behaviour I have observed is the following: Using H=0 is very","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28666"}},{"Add":{"text":"// stable, but has a very bad initial transient. Taking n to be 0 or","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28735"}},{"Add":{"text":"// positive improves the initial behaviour considerably, but","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28796"}},{"Add":{"text":"// introduces a drift that can kill the evolution at very late times.","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28866"}},{"Add":{"text":"// Empirically, the best value I have found is n=2, for which the","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:28932"}},{"Add":{"text":"// initial behaviour is very nice, and the late time drift is quite","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29000"}},{"Add":{"text":"// small.","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29010"}},{"Add":{"text":"//","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29013"}},{"Add":{"text":"// Another problem with this condition is that it does not use the","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29080"}},{"Add":{"text":"// physical characteristic speed, but rather it assumes a wave speed","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29149"}},{"Add":{"text":"// of v, so the boundaries should be out in the region where the","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29214"}},{"Add":{"text":"// characteristic speed is constant. Notice that this speed does not","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29283"}},{"Add":{"text":"// have to be 1. For gauge quantities {alpha, phi, trK} we can have a","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29353"}},{"Add":{"text":"// different asymptotic speed, which is why the value of v is passed","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29422"}},{"Add":{"text":"// as a parameter.","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29441"}},{"Add":{"text":"#if 0","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29447"}},{"Add":{"text":"extern \"C\" void WaveToyAMReX_RadiativeBoundaries(CCTK_ARGUMENTS) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29514"}}],"del_contents":[{"Del":{"text":"extern \"C\" void WaveToyAMReX_Evolve(CCTK_ARGUMENTS) {","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:5505"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":285,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":5559}],"down_context":[{"change":3,"pos":5782}],"flag":"BLOCK","start":29516,"end":29705,"inode":{"change":3,"pos":37}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29516"}},{"Add":{"text":" constexpr CCTK_REAL phi_inf = 0; // value at infinity","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29572"}},{"Add":{"text":" constexpr CCTK_REAL phi_vel = 1; // propagation speed","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29628"}},{"Add":{"text":" // constexpr CCTK_REAL psi_inf = 0;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29666"}},{"Add":{"text":" // constexpr CCTK_REAL psi_vel = 1;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29704"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":292,"ins":{"up_context":[{"change":3,"pos":6487}],"down_context":[{"change":3,"pos":6508}],"flag":"BLOCK","start":29706,"end":29736,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6487},"to":{"change":3,"start":6487,"end":6508},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" CCTK_REAL x0[dim], dx[dim];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29735"}}],"del_contents":[{"Del":{"text":" CCTK_REAL dx[dim];","pos":"KG47IF4CPCUT3BHS34WDRHTH5HYMBTY4OSTB3X7APR2E5ZJ32IYQC:6507"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":294,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":6542}],"down_context":[{"change":3,"pos":6542}],"flag":"BLOCK","start":29737,"end":29771,"inode":{"change":3,"pos":37}}},"contents":[{"Add":{"text":" x0[d] = CCTK_ORIGIN_SPACE(d);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29770"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":303,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":6579}],"down_context":[{"change":3,"pos":5888}],"flag":"BLOCK","start":29772,"end":29896,"inode":{"change":3,"pos":37}}},"contents":[{"Add":{"text":" // CCTK_VINFO(\"imin[%d,%d,%d]\", imin[0], imin[1], imin[2]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29833"}},{"Add":{"text":" // CCTK_VINFO(\"imax[%d,%d,%d]\", imax[0], imax[1], imax[2]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29895"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":306,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":5889}],"down_context":[{"change":3,"pos":4458}],"flag":"BLOCK","start":29897,"end":30475,"inode":{"change":3,"pos":37}}},"contents":[{"Add":{"text":" int gbox[2 * dim]; // Are the boundaries (if any) ghosts zones?","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29962"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:29996"}},{"Add":{"text":" // #error \"NEED lbnd>=0 ALWAYS\"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30032"}},{"Add":{"text":" gbox[2 * d] = cctk_lbnd[d] > 0;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30068"}},{"Add":{"text":" gbox[2 * d + 1] = cctk_lbnd[d] + cctk_lsh[d] < cctk_gsh[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30132"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30136"}},{"Add":{"text":" // CCTK_VINFO(\"lbnd[%d,%d,%d]\", cctk_lbnd[0], cctk_lbnd[1], cctk_lbnd[2]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30213"}},{"Add":{"text":" // CCTK_VINFO(\"lsh[%d,%d,%d]\", cctk_lsh[0], cctk_lsh[1], cctk_lsh[2]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30286"}},{"Add":{"text":" // CCTK_VINFO(\"gsh[%d,%d,%d]\", cctk_gsh[0], cctk_gsh[1], cctk_gsh[2]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30359"}},{"Add":{"text":" // CCTK_VINFO(\"gbox[%d,%d,%d,%d,%d,%d]\", gbox[0], gbox[1], gbox[2], gbox[3],","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30438"}},{"Add":{"text":" // gbox[4], gbox[5]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30473"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30474"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":322,"ins":{"up_context":[{"change":3,"pos":6652}],"down_context":[{"change":3,"pos":6740}],"flag":"BLOCK","start":30476,"end":31215,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6652},"to":{"change":3,"start":13842,"end":13932},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" for (int dir = 0; dir < dim; ++dir) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30515"}},{"Add":{"text":" for (int face = 0; face < 2; ++face) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30558"}},{"Add":{"text":" if (!gbox[2 * dir + face]) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30593"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30594"}},{"Add":{"text":" int bmin[dim], bmax[dim];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30628"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30668"}},{"Add":{"text":" // Skip edges and corners if d < dir","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30715"}},{"Add":{"text":" bmin[d] = d < dir ? imin[d] : 0;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30758"}},{"Add":{"text":" bmax[d] = d < dir ? imax[d] : cctk_lsh[d];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30811"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30821"}},{"Add":{"text":" if (face == 0)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30844"}},{"Add":{"text":" bmax[dir] = imin[dir];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30877"}},{"Add":{"text":" else","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30890"}},{"Add":{"text":" bmin[dir] = imax[dir];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30923"}},{"Add":{"text":" // CCTK_VINFO(\"dir=%d face=%d\", dir, face);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:30975"}},{"Add":{"text":" // CCTK_VINFO(\"bmin[%d,%d,%d]\", bmin[0], bmin[1], bmin[2]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31043"}},{"Add":{"text":" // CCTK_VINFO(\"bmax[%d,%d,%d]\", bmax[0], bmax[1], bmax[2]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31111"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31112"}},{"Add":{"text":" for (int k = bmin[2]; k < bmax[2]; ++k) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31162"}},{"Add":{"text":" for (int j = bmin[1]; j < bmax[1]; ++j) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31214"}}],"del_contents":[{"Del":{"text":" for (int k = imin[2]; k < imax[2]; ++k) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:13885"}},{"Del":{"text":" for (int j = imin[1]; j < imax[1]; ++j) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:13931"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":343,"ins":{"up_context":[{"change":3,"pos":6757}],"down_context":[{"change":3,"pos":14728}],"flag":"BLOCK","start":31216,"end":32472,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6757},"to":{"change":3,"start":13933,"end":13981},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":13981},"to":{"change":3,"start":3573,"end":3630},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":3573},"to":{"change":3,"start":3573,"end":3630},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":3630},"to":{"change":3,"start":5000,"end":5321},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":5000},"to":{"change":3,"start":5000,"end":5321},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":5321},"to":{"change":3,"start":12294,"end":12526},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" for (int i = bmin[0]; i < bmax[0]; ++i) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31269"}},{"Add":{"text":" const int idx = CCTK_GFINDEX3D(cctkGH, i, j, k);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31332"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31396"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31460"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31524"}},{"Add":{"text":" CCTK_REAL r = sqrt(pow(x, 2) + pow(y, 2) + pow(z, 2));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31593"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31594"}},{"Add":{"text":" int ddir = dir == 0 ? di : dir == 1 ? dj : dk;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31655"}},{"Add":{"text":" int ndir = 2 * face - 1;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31694"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31695"}},{"Add":{"text":" // CCTK_REAL gradphi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31732"}},{"Add":{"text":" // (phi_p[idx] - phi_p[idx - ndir * ddir]) / dx[dir];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31804"}},{"Add":{"text":" // phi[idx] =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31832"}},{"Add":{"text":" // phi_p[idx] -","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31866"}},{"Add":{"text":" // dt * phi_vel * (r * gradphi + (phi_p[idx] - phi_inf) / r);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31946"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31947"}},{"Add":{"text":" // CCTK_REAL gradpsi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:31984"}},{"Add":{"text":" // (psi_p[idx] - psi_p[idx - ndir * ddir]) / dx[dir];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32056"}},{"Add":{"text":" // psi[idx] =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32084"}},{"Add":{"text":" // psi_p[idx] -","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32118"}},{"Add":{"text":" // dt * psi_vel * (r * gradpsi + (psi_p[idx] - psi_inf) / r);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32198"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32199"}},{"Add":{"text":" CCTK_REAL gradphi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32233"}},{"Add":{"text":" (phi_p[idx] - phi_p[idx - ndir * ddir]) / dx[dir];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32302"}},{"Add":{"text":" psi[idx] = -phi_vel * (r * gradphi + (phi_p[idx] - phi_inf) / r);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32382"}},{"Add":{"text":" phi[idx] = phi_p[idx] + dt * psi[idx];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32435"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32449"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32461"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32471"}}],"del_contents":[{"Del":{"text":" for (int i = imin[0]; i < imax[0]; ++i) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:13980"}},{"Del":{"text":" const int idx = CCTK_GFINDEX3D(cctkGH, i, j, k);","pos":"AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC:3629"}},{"Del":{"text":" CCTK_REAL ddx_phi =","pos":"ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC:5027"}},{"Del":{"text":" (phi_p[idx - di] - 2 * phi_p[idx] + phi_p[idx + di]) / sqr(dx[0]);","pos":"ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC:5106"}},{"Del":{"text":" CCTK_REAL ddy_phi =","pos":"ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC:5134"}},{"Del":{"text":" (phi_p[idx - dj] - 2 * phi_p[idx] + phi_p[idx + dj]) / sqr(dx[1]);","pos":"ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC:5213"}},{"Del":{"text":" CCTK_REAL ddz_phi =","pos":"ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC:5241"}},{"Del":{"text":" (phi_p[idx - dk] - 2 * phi_p[idx] + phi_p[idx + dk]) / sqr(dx[2]);","pos":"ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC:5320"}},{"Del":{"text":" // phi[idx] = 2 * phi_p[idx] - phi_p_p[idx] +","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12347"}},{"Del":{"text":" // sqr(dt) * (ddx_phi + ddy_phi + ddz_phi);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12410"}},{"Del":{"text":" psi[idx] = psi_p[idx] + dt * (ddx_phi + ddy_phi + ddz_phi);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12478"}},{"Del":{"text":" phi[idx] = phi_p[idx] + dt * psi[idx];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12525"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":374,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":14742}],"down_context":[{"change":3,"pos":14742}],"flag":"BLOCK","start":32473,"end":33990,"inode":{"change":3,"pos":37}}},"contents":[{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32476"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32478"}},{"Add":{"text":"#endif","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32485"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32486"}},{"Add":{"text":"extern \"C\" void WaveToyAMReX_Sync(CCTK_ARGUMENTS) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32538"}},{"Add":{"text":" // do nothinga","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32555"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32557"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32558"}},{"Add":{"text":"extern \"C\" void WaveToyAMReX_Boundaries(CCTK_ARGUMENTS) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32616"}},{"Add":{"text":" DECLARE_CCTK_ARGUMENTS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32642"}},{"Add":{"text":" DECLARE_CCTK_PARAMETERS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32669"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32670"}},{"Add":{"text":" const CCTK_REAL t = cctk_time;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32703"}},{"Add":{"text":" const CCTK_REAL dt = CCTK_DELTA_TIME;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32743"}},{"Add":{"text":" CCTK_REAL x0[dim], dx[dim];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32773"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32807"}},{"Add":{"text":" x0[d] = CCTK_ORIGIN_SPACE(d);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32841"}},{"Add":{"text":" dx[d] = CCTK_DELTA_SPACE(d);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32874"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32878"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32879"}},{"Add":{"text":" if (CCTK_EQUALS(boundary_condition, \"none\")) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32928"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32929"}},{"Add":{"text":" // do nothing","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32947"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:32948"}},{"Add":{"text":" } else if (CCTK_EQUALS(boundary_condition, \"initial\")) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33007"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33008"}},{"Add":{"text":" if (CCTK_EQUALS(initial_condition, \"central potential\")) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33071"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33072"}},{"Add":{"text":" Loop::loop_bnd(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33137"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33195"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33253"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33311"}},{"Add":{"text":" phi[idx] = central_potential(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33361"}},{"Add":{"text":" psi[idx] = timederiv(central_potential, dt)(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33426"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33436"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33437"}},{"Add":{"text":" } else {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33450"}},{"Add":{"text":" assert(0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33467"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33473"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33474"}},{"Add":{"text":" } else {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33485"}},{"Add":{"text":" assert(0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33500"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33504"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33506"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33507"}},{"Add":{"text":"extern \"C\" void WaveToyAMReX_NaNCheck_past(CCTK_ARGUMENTS) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33568"}},{"Add":{"text":" DECLARE_CCTK_ARGUMENTS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33594"}},{"Add":{"text":" DECLARE_CCTK_PARAMETERS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33621"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33622"}},{"Add":{"text":" Loop::loop_all(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33683"}},{"Add":{"text":" assert(CCTK_isfinite(phi_p[idx]));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33722"}},{"Add":{"text":" assert(CCTK_isfinite(psi_p[idx]));","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33761"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33767"}},{"Add":{"text":"}","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33769"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33770"}},{"Add":{"text":"extern \"C\" void WaveToyAMReX_NaNCheck_current(CCTK_ARGUMENTS) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33834"}},{"Add":{"text":" DECLARE_CCTK_ARGUMENTS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33860"}},{"Add":{"text":" DECLARE_CCTK_PARAMETERS;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33887"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33888"}},{"Add":{"text":" int levfac = cctk_levfac[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33919"}},{"Add":{"text":" int lev = 0;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33934"}},{"Add":{"text":" while (levfac > 1) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33957"}},{"Add":{"text":" levfac >>= 1;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33975"}},{"Add":{"text":" lev += 1;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33989"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":439,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":14746}],"down_context":[{"change":3,"pos":14746}],"flag":"BLOCK","start":33991,"end":34418,"inode":{"change":3,"pos":37}}},"contents":[{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:33991"}},{"Add":{"text":" bool has_error = false;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34017"}},{"Add":{"text":" Loop::loop_all(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34078"}},{"Add":{"text":" if (!CCTK_isfinite(phi[idx]) || !CCTK_isfinite(psi[idx])) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34142"}},{"Add":{"text":" CCTK_VINFO(\"level %d idx=[%d,%d,%d] gidx=[%d,%d,%d] (%g,%g)\", lev, i, j,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34221"}},{"Add":{"text":" k, cctk_lbnd[0] + i, cctk_lbnd[1] + j, cctk_lbnd[2] + k,","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34295"}},{"Add":{"text":" phi[idx], psi[idx]);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34333"}},{"Add":{"text":" has_error = true;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34357"}},{"Add":{"text":" }","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34363"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34369"}},{"Add":{"text":" if (has_error)","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34386"}},{"Add":{"text":" CCTK_VERROR(\"NaNs found\");","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34417"}}]}},{"Edit":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":462,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":14984},"to":{"change":3,"start":14984,"end":15187},"introduced_by":3}],"inode":{"change":3,"pos":37}}},"contents":[{"Del":{"text":" int imin[dim], imax[dim];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15011"}},{"Del":{"text":" for (int d = 0; d < dim; ++d) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15045"}},{"Del":{"text":" imin[d] = cctk_bbox[2 * d] ? 0 : cctk_nghostzones[d];","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15103"}},{"Del":{"text":" imax[d] = cctk_lsh[d] - (cctk_bbox[2 * d + 1] ? 0 : cctk_nghostzones[d]);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15181"}},{"Del":{"text":" }","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15185"}},{"Del":{"text":"","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15186"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":466,"ins":{"up_context":[{"change":3,"pos":15282}],"down_context":[{"change":3,"pos":5441}],"flag":"BLOCK","start":34419,"end":35497,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":15282},"to":{"change":3,"start":15282,"end":15494},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":15494},"to":{"change":3,"start":12527,"end":13559},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":15853},"to":{"change":3,"start":5433,"end":5441},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":13559},"to":{"change":3,"start":5433,"end":5441},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":5433},"to":{"change":3,"start":5433,"end":5441},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":5441},"to":{"change":3,"start":2706,"end":2716},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" Loop::loop_int(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34479"}},{"Add":{"text":" CCTK_REAL ddx_phi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34503"}},{"Add":{"text":" (phi[idx - di] - 2 * phi[idx] + phi[idx + di]) / pow(dx[0], 2);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34575"}},{"Add":{"text":" CCTK_REAL ddy_phi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34599"}},{"Add":{"text":" (phi[idx - dj] - 2 * phi[idx] + phi[idx + dj]) / pow(dx[1], 2);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34671"}},{"Add":{"text":" CCTK_REAL ddz_phi =","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34695"}},{"Add":{"text":" (phi[idx - dk] - 2 * phi[idx] + phi[idx + dk]) / pow(dx[2], 2);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34767"}},{"Add":{"text":" CCTK_REAL psi_n = psi[idx] + dt * (ddx_phi + ddy_phi + ddz_phi);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34836"}},{"Add":{"text":" CCTK_REAL dt_phi_p = psi_n;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34868"}},{"Add":{"text":" CCTK_REAL dt_phi_m = psi_p[idx];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34905"}},{"Add":{"text":" CCTK_REAL dx_phi_p = (phi[idx + di] - phi[idx]) / dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:34966"}},{"Add":{"text":" CCTK_REAL dx_phi_m = (phi[idx] - phi[idx - di]) / dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35027"}},{"Add":{"text":" CCTK_REAL dy_phi_p = (phi[idx + dj] - phi[idx]) / dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35088"}},{"Add":{"text":" CCTK_REAL dy_phi_m = (phi[idx] - phi[idx - dj]) / dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35149"}},{"Add":{"text":" CCTK_REAL dz_phi_p = (phi[idx + dk] - phi[idx]) / dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35210"}},{"Add":{"text":" CCTK_REAL dz_phi_m = (phi[idx] - phi[idx - dk]) / dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35271"}},{"Add":{"text":" eps[idx] = (pow(dt_phi_p, 2) + pow(dt_phi_m, 2) + pow(dx_phi_p, 2) +","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35344"}},{"Add":{"text":" pow(dx_phi_m, 2) + pow(dy_phi_p, 2) + pow(dy_phi_m, 2) +","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35417"}},{"Add":{"text":" pow(dz_phi_p, 2) + pow(dz_phi_m, 2)) /","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35472"}},{"Add":{"text":" 4;","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35490"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35496"}}],"del_contents":[{"Del":{"text":" for (int k = imin[2]; k < imax[2]; ++k) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15325"}},{"Del":{"text":" for (int j = imin[1]; j < imax[1]; ++j) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15371"}},{"Del":{"text":"#pragma omp simd","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15388"}},{"Del":{"text":" for (int i = imin[0]; i < imax[0]; ++i) {","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15436"}},{"Del":{"text":" const int idx = CCTK_GFINDEX3D(cctkGH, i, j, k);","pos":"2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC:15493"}},{"Del":{"text":" CCTK_REAL ddx_phi =","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12554"}},{"Del":{"text":" (phi[idx - di] - 2 * phi[idx] + phi[idx + di]) / sqr(dx[0]);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12627"}},{"Del":{"text":" CCTK_REAL ddy_phi =","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12655"}},{"Del":{"text":" (phi[idx - dj] - 2 * phi[idx] + phi[idx + dj]) / sqr(dx[1]);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12728"}},{"Del":{"text":" CCTK_REAL ddz_phi =","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12756"}},{"Del":{"text":" (phi[idx - dk] - 2 * phi[idx] + phi[idx + dk]) / sqr(dx[2]);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12829"}},{"Del":{"text":" CCTK_REAL psi_n = psi[idx] + dt * (ddx_phi + ddy_phi + ddz_phi);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12902"}},{"Del":{"text":" CCTK_REAL dt_phi_p = psi_n;","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12938"}},{"Del":{"text":" CCTK_REAL dt_phi_m = psi_p[idx];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:12979"}},{"Del":{"text":" CCTK_REAL dx_phi_p = (phi[idx + di] - phi[idx]) / dx[0];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13044"}},{"Del":{"text":" CCTK_REAL dx_phi_m = (phi[idx] - phi[idx - di]) / dx[0];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13109"}},{"Del":{"text":" CCTK_REAL dy_phi_p = (phi[idx + dj] - phi[idx]) / dx[1];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13174"}},{"Del":{"text":" CCTK_REAL dy_phi_m = (phi[idx] - phi[idx - dj]) / dx[1];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13239"}},{"Del":{"text":" CCTK_REAL dz_phi_p = (phi[idx + dk] - phi[idx]) / dx[2];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13304"}},{"Del":{"text":" CCTK_REAL dz_phi_m = (phi[idx] - phi[idx - dk]) / dx[2];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13369"}},{"Del":{"text":" eps[idx] =","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13388"}},{"Del":{"text":" (sqr(dt_phi_p) + sqr(dt_phi_m) + sqr(dx_phi_p) + sqr(dx_phi_m) +","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13465"}},{"Del":{"text":" sqr(dy_phi_p) + sqr(dy_phi_m) + sqr(dz_phi_p) + sqr(dz_phi_m)) /","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13543"}},{"Del":{"text":" 4;","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13558"}},{"Del":{"text":" }","pos":"ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC:5440"}},{"Del":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2711"}},{"Del":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2715"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":503,"ins":{"up_context":[{"change":3,"pos":13659}],"down_context":[{"change":3,"pos":14177}],"flag":"BLOCK","start":35498,"end":35858,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":13659},"to":{"change":3,"start":13659,"end":13749},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":2803},"to":{"change":3,"start":8503,"end":8520},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":6218},"to":{"change":3,"start":8503,"end":8520},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":13749},"to":{"change":3,"start":8503,"end":8520},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":3862},"to":{"change":3,"start":8503,"end":8520},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":8503},"to":{"change":3,"start":8503,"end":8520},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":8520},"to":{"change":3,"start":13750,"end":14176},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":16026},"to":{"change":3,"start":6606,"end":6614},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":14176},"to":{"change":3,"start":6606,"end":6614},"introduced_by":3},{"previous":"","flag":"DELETED","from":{"change":3,"pos":4192},"to":{"change":3,"start":6606,"end":6614},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6606},"to":{"change":3,"start":6606,"end":6614},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":6614},"to":{"change":3,"start":2804,"end":2810},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" Loop::loop_all(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35560"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35616"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35672"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35728"}},{"Add":{"text":" phierr[idx] = phi[idx] - standing(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35781"}},{"Add":{"text":" psierr[idx] = psi[idx] - timederiv(standing, dt)(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35849"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35857"}}],"del_contents":[{"Del":{"text":" for (int k = 0; k < cctk_lsh[2]; ++k) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13702"}},{"Del":{"text":" for (int j = 0; j < cctk_lsh[1]; ++j) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13748"}},{"Del":{"text":"#pragma omp simd","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:8519"}},{"Del":{"text":" for (int i = 0; i < cctk_lsh[0]; ++i) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13797"}},{"Del":{"text":" const int idx = CCTK_GFINDEX3D(cctkGH, i, j, k);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13856"}},{"Del":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13916"}},{"Del":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:13976"}},{"Del":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14036"}},{"Del":{"text":" phierr[idx] = phi[idx] - standing(t, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14093"}},{"Del":{"text":" psierr[idx] = psi[idx] - timederiv(standing, dt)(t, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14165"}},{"Del":{"text":" }","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14175"}},{"Del":{"text":" }","pos":"ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC:6613"}},{"Del":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2809"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":513,"ins":{"up_context":[{"change":3,"pos":14247}],"down_context":[{"change":3,"pos":2810}],"flag":"BLOCK","start":35859,"end":37133,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":14247},"to":{"change":3,"start":14247,"end":14794},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" Loop::loop_all(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35921"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:35977"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36033"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36089"}},{"Add":{"text":" phierr[idx] = phi[idx] - periodic_gaussian(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36151"}},{"Add":{"text":" psierr[idx] = psi[idx] - timederiv(periodic_gaussian, dt)(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36228"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36236"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36237"}},{"Add":{"text":" } else if (CCTK_EQUALS(initial_condition, \"Gaussian\")) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36296"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36297"}},{"Add":{"text":" Loop::loop_all(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36360"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36416"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36472"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36528"}},{"Add":{"text":" phierr[idx] = phi[idx] - gaussian(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36581"}},{"Add":{"text":" psierr[idx] = psi[idx] - timederiv(gaussian, dt)(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36649"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36657"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36658"}},{"Add":{"text":" } else if (CCTK_EQUALS(initial_condition, \"central potential\")) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36726"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36727"}},{"Add":{"text":" Loop::loop_all(cctkGH, [&](int i, int j, int k, int idx) {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36790"}},{"Add":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36846"}},{"Add":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36902"}},{"Add":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:36958"}},{"Add":{"text":" phierr[idx] = phi[idx] - central_potential(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:37020"}},{"Add":{"text":" psierr[idx] = psi[idx] - timederiv(central_potential, dt)(t, x, y, z);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:37097"}},{"Add":{"text":" });","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:37105"}},{"Add":{"text":"","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:37106"}},{"Add":{"text":" } else {","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:37117"}},{"Add":{"text":" assert(0);","pos":"FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC:37132"}}],"del_contents":[{"Del":{"text":" for (int k = 0; k < cctk_lsh[2]; ++k) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14290"}},{"Del":{"text":" for (int j = 0; j < cctk_lsh[1]; ++j) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14336"}},{"Del":{"text":"#pragma omp simd","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14353"}},{"Del":{"text":" for (int i = 0; i < cctk_lsh[0]; ++i) {","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14401"}},{"Del":{"text":" const int idx = CCTK_GFINDEX3D(cctkGH, i, j, k);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14460"}},{"Del":{"text":" CCTK_REAL x = x0[0] + (cctk_lbnd[0] + i) * dx[0];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14520"}},{"Del":{"text":" CCTK_REAL y = x0[1] + (cctk_lbnd[1] + j) * dx[1];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14580"}},{"Del":{"text":" CCTK_REAL z = x0[2] + (cctk_lbnd[2] + k) * dx[2];","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14640"}},{"Del":{"text":" phierr[idx] = phi[idx] - gaussian(t, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14697"}},{"Del":{"text":" psierr[idx] = psi[idx] - timederiv(gaussian, dt)(t, x, y, z);","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14769"}},{"Del":{"text":" }","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14779"}},{"Del":{"text":" }","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14787"}},{"Del":{"text":" }","pos":"33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC:14793"}}]}}],"owner":"eschnett","repo":"cactusamrex","login":null}

…

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