{"header":{"message":"Implement refluxing\n","description":null,"timestamp":"2019-10-14T00:38:16Z","authors":[{"email":"schnetter@gmail.com","name":"Erik Schnetter"}]},"hash":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC","authors":[],"deps":{"hashes":[["GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC","Implement refluxing\n"],["AA",null],["24A4OZBZBQ6QXIQ3EOOCQIBTOWRA32TMSQ4CCL3LKIJVJPKZFHVQC","Make interpolation order choice more generic\n"],["LSOYKV2LJ6WOBTNCW43WXV47RIQEBNZFEJJZM5QA7XDZF4D2PANQC","AMReX: Remove #warning statements\n"],["E3MBKFT4GEFDAGZQQW4OROY5F6FWC46G6MRH54GDYTGO7O5YSRIAC","Make HydroToy work with multiple levels\n"],["2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC","AMR evolution should work now\n"],["BSMJ4V7GV3EOGY4KCSTOJQUOFE2OOCIKQETE4WC2WRNLWBQIBW3QC","Check for nans\n"],["PG2P3JQPLWZRLCAJ7JY2B7G7AM5DHOE2CJUKIPWREI3NAUKZF3TAC","AMR with staggered grids\n"],["TOBGHRPKEPSXDN56WGSZNWOMCBVJ4KUSLWYWI56MC2RR3MM3KLZAC","Restrict during evolution\n"],["BPRNUTY7MHK7LK4EY5MY5OFFG3ABOL7LWXD574L35M74YSQPULFAC","Keep track of which regions of which variables have valid data.\n\nAlso correct all respective bugs.\n"],["KCIWCVZOHG44WBOLKI2XK33WPHPRI5FWCETF4AOGTPZISKCW3CLQC","More work on poisoning\n"],["UTHNLH3J3VG7BBJPOKGE6DY7Z2QHDLY72TR2VMEDQYP73SIWZGKAC","Poison before restricting\n"],["722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC","Import initial AMReX driver for Cactus\n"],["3KQ5ZQE45TNGATMW4R4NHXVBULGOXHF7JYC53BZL2LNDQ2V7C2CAC","New parameter out_every\n"],["TVBD244E7Q7WV44CRBTFST535NUP3JAZH6OLL4IKDR3OWEXSU7HAC","Make AMR adaptive (for initial conditions)\n"],["33IC3UHCEPZLGS5ACS2JXHGT6CRU5LXU6PM6RDHCERPOIELVRVXQC","AMR is now adaptive\n"],["FEMASUBNU32NSG4DNXZX54CGCA57PVRGYO46L3A6F2EJ4BCSJ3SAC","AMR with point charge\n"],["5XGIB7XMEZNBLA5ZLQTXRTC3AZ5CTRGMXWBPVMWXG4DPHKWDF4ZAC","More work on I/O\n"],["QN2UTSQP4IMCMVXZNR24J22N24ASGXF6EWXQ2P3VWVQERUPFAFDQC","Use AmrMesh class\n"],["WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC","Begin to support multiple refinement levels\n"],["BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC","Set up cctkGH entries\n"],["MSBBCXVGD3GRLE5KAI6BKAFRV7SQUWI2SNN43AJAUD3ISRCEXY6QC","Snapshot before transitioning from AmrMesh to AmrCore\n"],["UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC","Overload evolution manager\n"],["WE6MDRN5SPK3THM4COLQFE3IUWBCQ5ZYUIAUCBJAZVEMMOVTNBOAC","Synchronize in the driver\n"]],"deps":["24A4OZBZBQ6QXIQ3EOOCQIBTOWRA32TMSQ4CCL3LKIJVJPKZFHVQC","LSOYKV2LJ6WOBTNCW43WXV47RIQEBNZFEJJZM5QA7XDZF4D2PANQC","E3MBKFT4GEFDAGZQQW4OROY5F6FWC46G6MRH54GDYTGO7O5YSRIAC"],"known":["TOBGHRPKEPSXDN56WGSZNWOMCBVJ4KUSLWYWI56MC2RR3MM3KLZAC","2DKSL6DKZAIYQUJGDULORCKU5K4Z5Z3W4RIKQYDSLKMCNQNDZFBAC","PG2P3JQPLWZRLCAJ7JY2B7G7AM5DHOE2CJUKIPWREI3NAUKZF3TAC","UTHNLH3J3VG7BBJPOKGE6DY7Z2QHDLY72TR2VMEDQYP73SIWZGKAC","BPRNUTY7MHK7LK4EY5MY5OFFG3ABOL7LWXD574L35M74YSQPULFAC","KCIWCVZOHG44WBOLKI2XK33WPHPRI5FWCETF4AOGTPZISKCW3CLQC","BSMJ4V7GV3EOGY4KCSTOJQUOFE2OOCIKQETE4WC2WRNLWBQIBW3QC"]},"hunks":[{"Edit":{"inode":{"change":13,"pos":17918},"path":"AMReX/param.ccl","line":159,"atom":{"NewVertex":{"up_context":[{"change":14,"pos":4}],"down_context":[{"change":14,"pos":4}],"flag":"BLOCK","start":0,"end":74,"inode":{"change":13,"pos":17918}}},"contents":[{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:0"}},{"Add":{"text":"BOOLEAN do_reflux \"Manage flux registers to ensure conservation\"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:65"}},{"Add":{"text":"{","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:67"}},{"Add":{"text":"} yes","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:73"}}]}},{"Edit":{"inode":{"change":13,"pos":15972},"path":"AMReX/src/driver.cxx","line":125,"atom":{"NewVertex":{"up_context":[{"change":15,"pos":1273}],"down_context":[{"change":16,"pos":1301}],"flag":"BLOCK","start":75,"end":519,"inode":{"change":13,"pos":15972}}},"contents":[{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:75"}},{"Add":{"text":"array get_group_fluxes(const int gi) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:124"}},{"Add":{"text":" assert(gi >= 0);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:143"}},{"Add":{"text":" const int tags = CCTK_GroupTagsTableI(gi);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:188"}},{"Add":{"text":" assert(tags >= 0);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:209"}},{"Add":{"text":" vector fluxes_buf(1000);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:242"}},{"Add":{"text":" const int iret =","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:261"}},{"Add":{"text":" Util_TableGetString(tags, fluxes_buf.size(), fluxes_buf.data(), \"fluxes\");","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:342"}},{"Add":{"text":" if (iret == UTIL_ERROR_TABLE_NO_SUCH_KEY) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:388"}},{"Add":{"text":" fluxes_buf[0] = '\\0'; // default: empty (no fluxes)","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:444"}},{"Add":{"text":" } else if (iret >= 0) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:470"}},{"Add":{"text":" // do nothing","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:488"}},{"Add":{"text":" } else {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:499"}},{"Add":{"text":" assert(0);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:514"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:518"}}]}},{"Edit":{"inode":{"change":13,"pos":15972},"path":"AMReX/src/driver.cxx","line":141,"atom":{"NewVertex":{"up_context":[{"change":16,"pos":1302}],"down_context":[{"change":16,"pos":1302}],"flag":"BLOCK","start":520,"end":1474,"inode":{"change":13,"pos":15972}}},"contents":[{"Add":{"text":" const string str(fluxes_buf.data());","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:558"}},{"Add":{"text":" vector strs;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:581"}},{"Add":{"text":" size_t end = 0;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:599"}},{"Add":{"text":" while (end < str.size()) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:628"}},{"Add":{"text":" size_t begin = str.find_first_not_of(' ', end);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:680"}},{"Add":{"text":" if (begin == string::npos)","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:711"}},{"Add":{"text":" break;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:724"}},{"Add":{"text":" end = str.find(' ', begin);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:756"}},{"Add":{"text":" strs.push_back(str.substr(begin, end - begin));","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:808"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:812"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:813"}},{"Add":{"text":" array fluxes;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:839"}},{"Add":{"text":" fluxes.fill(-1);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:858"}},{"Add":{"text":" if (strs.empty())","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:878"}},{"Add":{"text":" return fluxes; // No fluxes specified","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:920"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:921"}},{"Add":{"text":" assert(strs.size() == dim); // Check number of fluxes","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:977"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1011"}},{"Add":{"text":" auto str1 = strs[d];","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1036"}},{"Add":{"text":" if (str1.find(':') == string::npos) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1078"}},{"Add":{"text":" const char *impl = CCTK_GroupImplementationI(gi);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1134"}},{"Add":{"text":" str1 = string(impl) + \"::\" + str1;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1175"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1181"}},{"Add":{"text":" int gi1 = CCTK_GroupIndex(str1.c_str());","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1226"}},{"Add":{"text":" assert(gi1 >= 0); // Check fluxes are valid groups","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1281"}},{"Add":{"text":" fluxes[d] = gi1;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1302"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1306"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1307"}},{"Add":{"text":" for (int d = 0; d < dim; ++d)","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1339"}},{"Add":{"text":" for (int d1 = d + 1; d1 < dim; ++d1)","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1380"}},{"Add":{"text":" assert(fluxes[d] != fluxes[d1]); // Check groups are all different","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1453"}},{"Add":{"text":" return fluxes;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1470"}},{"Add":{"text":"}","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1472"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1473"}}]}},{"Edit":{"inode":{"change":13,"pos":15972},"path":"AMReX/src/driver.cxx","line":220,"atom":{"NewVertex":{"up_context":[{"change":5,"pos":493}],"down_context":[{"change":17,"pos":2549}],"flag":"BLOCK","start":1475,"end":2530,"inode":{"change":13,"pos":15972}}},"contents":[{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1480"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1481"}},{"Add":{"text":" if (level > 0) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1502"}},{"Add":{"text":" array fluxes = get_group_fluxes(groupdata.groupindex);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1573"}},{"Add":{"text":" const bool have_fluxes = fluxes[0] >= 0;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1620"}},{"Add":{"text":" if (have_fluxes) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1645"}},{"Add":{"text":" assert((groupdata.indextype == array{1, 1, 1}));","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1712"}},{"Add":{"text":" groupdata.freg = make_unique(","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1764"}},{"Add":{"text":" gba, dm, ghext->amrcore->refRatio(level - 1), level,","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1829"}},{"Add":{"text":" groupdata.numvars);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1861"}},{"Add":{"text":" groupdata.fluxes = fluxes;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1896"}},{"Add":{"text":" } else {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1911"}},{"Add":{"text":" groupdata.fluxes.fill(-1);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1946"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1954"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1960"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1964"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:1965"}},{"Add":{"text":" // Check flux register consistency","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2002"}},{"Add":{"text":" for (int gi = 0; gi < numgroups; ++gi) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2045"}},{"Add":{"text":" const auto &groupdata = leveldata.groupdata.at(gi);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2101"}},{"Add":{"text":" if (groupdata.freg) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2127"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2165"}},{"Add":{"text":" assert(groupdata.fluxes[d] != groupdata.groupindex);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2226"}},{"Add":{"text":" const auto &flux_groupdata =","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2263"}},{"Add":{"text":" leveldata.groupdata.at(groupdata.fluxes[d]);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2320"}},{"Add":{"text":" array flux_indextype{1, 1, 1};","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2369"}},{"Add":{"text":" flux_indextype[d] = 0;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2400"}},{"Add":{"text":" assert(flux_groupdata.indextype == flux_indextype);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2460"}},{"Add":{"text":" assert(flux_groupdata.numvars == groupdata.numvars);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2521"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2529"}}]}},{"Edit":{"inode":{"change":13,"pos":15972},"path":"AMReX/src/driver.cxx","line":538,"atom":{"NewVertex":{"up_context":[{"change":5,"pos":1901}],"down_context":[{"change":5,"pos":579}],"flag":"BLOCK","start":2531,"end":2708,"inode":{"change":13,"pos":15972}}},"contents":[{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2531"}},{"Add":{"text":" if (groupdata.freg)","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2557"}},{"Add":{"text":" groupdata.freg = make_unique(","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2609"}},{"Add":{"text":" gba, dm, ghext->amrcore->refRatio(level - 1), level,","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2674"}},{"Add":{"text":" groupdata.numvars);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2706"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2707"}}]}},{"Edit":{"inode":{"change":13,"pos":15275},"path":"AMReX/src/driver.hxx","line":15,"atom":{"NewVertex":{"up_context":[{"change":15,"pos":3199}],"down_context":[{"change":2,"pos":777}],"flag":"BLOCK","start":2709,"end":2741,"inode":{"change":13,"pos":15275}}},"contents":[{"Add":{"text":"#include ","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2740"}}]}},{"Edit":{"inode":{"change":13,"pos":15275},"path":"AMReX/src/driver.hxx","line":104,"atom":{"NewVertex":{"up_context":[{"change":18,"pos":212}],"down_context":[{"change":19,"pos":1601}],"flag":"BLOCK","start":2742,"end":2743,"inode":{"change":13,"pos":15275}}},"contents":[{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2742"}}]}},{"Edit":{"inode":{"change":13,"pos":15275},"path":"AMReX/src/driver.hxx","line":108,"atom":{"NewVertex":{"up_context":[{"change":5,"pos":2839}],"down_context":[{"change":20,"pos":245}],"flag":"BLOCK","start":2744,"end":2923,"inode":{"change":13,"pos":15275}}},"contents":[{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2744"}},{"Add":{"text":" // flux register between this and the next coarser level","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2807"}},{"Add":{"text":" unique_ptr freg;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2844"}},{"Add":{"text":" // associated flux group indices","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2883"}},{"Add":{"text":" array fluxes; // [dir]","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2922"}}]}},{"Edit":{"inode":{"change":21,"pos":531},"path":"AMReX/src/schedule.cxx","line":58,"atom":{"NewVertex":{"up_context":[{"change":22,"pos":4580}],"down_context":[{"change":5,"pos":134}],"flag":"BLOCK","start":2924,"end":2948,"inode":{"change":21,"pos":531}}},"contents":[{"Add":{"text":"void Reflux(int level);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2947"}}]}},{"Edit":{"inode":{"change":21,"pos":531},"path":"AMReX/src/schedule.cxx","line":973,"atom":{"NewVertex":{"up_context":[{"change":23,"pos":5679}],"down_context":[{"change":5,"pos":270}],"flag":"BLOCK","start":2949,"end":3094,"inode":{"change":21,"pos":531}}},"contents":[{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2949"}},{"Add":{"text":" // Reflux","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2963"}},{"Add":{"text":" assert(current_level == -1);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:2996"}},{"Add":{"text":" for (int level = int(ghext->leveldata.size()) - 2; level >= 0; --level)","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3072"}},{"Add":{"text":" Reflux(level);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3093"}}]}},{"Edit":{"inode":{"change":21,"pos":531},"path":"AMReX/src/schedule.cxx","line":1264,"atom":{"NewVertex":{"up_context":[{"change":24,"pos":667}],"down_context":[{"change":21,"pos":5952}],"flag":"BLOCK","start":3095,"end":5787,"inode":{"change":21,"pos":531}}},"contents":[{"Add":{"text":"}","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3096"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3097"}},{"Add":{"text":"void Reflux(int level) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3122"}},{"Add":{"text":" DECLARE_CCTK_PARAMETERS;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3149"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3150"}},{"Add":{"text":" if (!do_reflux)","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3168"}},{"Add":{"text":" return;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3180"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3181"}},{"Add":{"text":" CCTK_VINFO(\"Refluxing level %d\", level);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3224"}},{"Add":{"text":"#warning \"TODO\"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3240"}},{"Add":{"text":" bool didprint = false;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3265"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3266"}},{"Add":{"text":" static Timer timer(\"Reflux\");","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3298"}},{"Add":{"text":" Interval interval(timer);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3326"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3327"}},{"Add":{"text":" auto &leveldata = ghext->leveldata.at(level);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3375"}},{"Add":{"text":" const auto &fineleveldata = ghext->leveldata.at(level + 1);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3437"}},{"Add":{"text":" for (int gi = 0; gi < int(leveldata.groupdata.size()); ++gi) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3502"}},{"Add":{"text":" const int tl = 0;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3524"}},{"Add":{"text":" auto &groupdata = leveldata.groupdata.at(gi);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3574"}},{"Add":{"text":" const auto &finegroupdata = fineleveldata.groupdata.at(gi);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3638"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3639"}},{"Add":{"text":" // If the group has associated fluxes","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3681"}},{"Add":{"text":" if (finegroupdata.freg) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3711"}},{"Add":{"text":" if (!didprint) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3734"}},{"Add":{"text":" CCTK_VINFO(\" found flux registers\");","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3780"}},{"Add":{"text":" didprint = true;","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3805"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3813"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3814"}},{"Add":{"text":" // Check coarse and fine data and fluxes are valid","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3871"}},{"Add":{"text":" for (int vi = 0; vi < finegroupdata.numvars; ++vi) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3930"}},{"Add":{"text":" assert(finegroupdata.valid.at(tl).at(vi).valid_int &&","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:3992"}},{"Add":{"text":" finegroupdata.valid.at(tl).at(vi).valid_bnd);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4053"}},{"Add":{"text":" assert(groupdata.valid.at(tl).at(vi).valid_int &&","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4111"}},{"Add":{"text":" groupdata.valid.at(tl).at(vi).valid_bnd);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4168"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4176"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4214"}},{"Add":{"text":" int flux_gi = finegroupdata.fluxes[d];","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4261"}},{"Add":{"text":" const auto &flux_finegroupdata = fineleveldata.groupdata.at(flux_gi);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4339"}},{"Add":{"text":" const auto &flux_groupdata = leveldata.groupdata.at(flux_gi);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4409"}},{"Add":{"text":" for (int vi = 0; vi < finegroupdata.numvars; ++vi) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4470"}},{"Add":{"text":" assert(flux_finegroupdata.valid.at(tl).at(vi).valid_int &&","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4539"}},{"Add":{"text":" flux_finegroupdata.valid.at(tl).at(vi).valid_bnd);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4607"}},{"Add":{"text":" assert(flux_groupdata.valid.at(tl).at(vi).valid_int &&","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4672"}},{"Add":{"text":" flux_groupdata.valid.at(tl).at(vi).valid_bnd);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4736"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4746"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4754"}},{"Add":{"text":"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4755"}},{"Add":{"text":"#warning \"TODO\"","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4771"}},{"Add":{"text":" const Geometry &geom0 = ghext->amrcore->Geom(level);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4830"}},{"Add":{"text":" const CCTK_REAL *restrict gdx = geom0.CellSize();","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4886"}},{"Add":{"text":" CCTK_REAL dt = 0.25 * pow(0.5, 2) * gdx[0];","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4936"}},{"Add":{"text":" CCTK_REAL dx = 1.0 * pow(0.5, level) * gdx[0];","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:4989"}},{"Add":{"text":" for (int d = 0; d < dim; ++d) {","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5027"}},{"Add":{"text":" int flux_gi = finegroupdata.fluxes[d];","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5074"}},{"Add":{"text":" const auto &flux_finegroupdata = fineleveldata.groupdata.at(flux_gi);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5152"}},{"Add":{"text":" const auto &flux_groupdata = leveldata.groupdata.at(flux_gi);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5222"}},{"Add":{"text":" finegroupdata.freg->CrseInit(*flux_groupdata.mfab.at(tl), d, 0, 0,","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5297"}},{"Add":{"text":" flux_groupdata.numvars, -dt * dx * dx);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5374"}},{"Add":{"text":" finegroupdata.freg->FineAdd(*flux_finegroupdata.mfab.at(tl), d, 0, 0,","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5452"}},{"Add":{"text":" flux_finegroupdata.numvars,","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5516"}},{"Add":{"text":" dt * (0.5 * dx) * (0.5 * dx));","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5583"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5591"}},{"Add":{"text":" const Geometry &geom = ghext->amrcore->Geom(level);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5649"}},{"Add":{"text":" finegroupdata.freg->Reflux(*groupdata.mfab.at(tl), 1.0, 0, 0,","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5717"}},{"Add":{"text":" groupdata.numvars, geom);","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5776"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5782"}},{"Add":{"text":" }","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5786"}}]}},{"Replacement":{"inode":{"change":21,"pos":531},"path":"AMReX/src/schedule.cxx","line":1353,"ins":{"up_context":[{"change":5,"pos":2920}],"down_context":[{"change":3,"pos":199}],"flag":"BLOCK","start":5788,"end":5868,"inode":{"change":21,"pos":531}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":5,"pos":2920},"to":{"change":5,"start":745,"end":832},"introduced_by":5},{"previous":"","flag":"DELETED","from":{"change":5,"pos":159},"to":{"change":5,"start":745,"end":832},"introduced_by":5},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":5,"pos":745},"to":{"change":5,"start":745,"end":832},"introduced_by":5}],"inode":{"change":21,"pos":531}},"ins_contents":[{"Add":{"text":" // If there is more than one time level, then we don't restrict the oldest.","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5867"}}],"del_contents":[{"Del":{"text":" // If there is more than one time level, then we don't restrict","pos":"TOBGHRPKEPSXDN56WGSZNWOMCBVJ4KUSLWYWI56MC2RR3MM3KLZAC:812"}},{"Del":{"text":" // the oldest.","pos":"TOBGHRPKEPSXDN56WGSZNWOMCBVJ4KUSLWYWI56MC2RR3MM3KLZAC:831"}}]}},{"Replacement":{"inode":{"change":21,"pos":531},"path":"AMReX/src/schedule.cxx","line":1360,"ins":{"up_context":[{"change":5,"pos":161}],"down_context":[{"change":5,"pos":8792}],"flag":"BLOCK","start":5869,"end":5959,"inode":{"change":21,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":5,"pos":161},"to":{"change":4,"start":738,"end":819},"introduced_by":4}],"inode":{"change":21,"pos":531}},"ins_contents":[{"Add":{"text":" // Only restrict valid grid functions. Restriction only uses the","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5939"}},{"Add":{"text":" // interior.","pos":"GQVQJCNQNO2KD7ZMC7RESCUAMUAP7OED6CTA6SYLZKQGXKXZ6T3QC:5958"}}],"del_contents":[{"Del":{"text":" // Only restrict valid grid functions. Restriction only uses the interior.","pos":"E3MBKFT4GEFDAGZQQW4OROY5F6FWC46G6MRH54GDYTGO7O5YSRIAC:818"}}]}}],"owner":"eschnett","repo":"cactusamrex","login":null}

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