{"header":{"message":"Store time levels separately\n","description":null,"timestamp":"2019-07-15T20:22:16Z","authors":[{"email":"schnetter@gmail.com","name":"Erik Schnetter"}]},"hash":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC","authors":[],"deps":{"hashes":[["UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC","Store time levels separately\n"],["AA",null],["WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC","Begin to support multiple refinement levels\n"],["722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC","Import initial AMReX driver for Cactus\n"],["UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC","Overload evolution manager\n"],["ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC","Move tile iterator to CallFunction\n"],["RTNZAS3UPI6GG3KY4Z5WVXJ4R2YF5427BB6WAV3GHRS5W7XPOSUQC","Initialize coordinates in the driver\n"],["BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC","Set up cctkGH entries\n"],["AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC","Handle grid function pointers in driver\n"],["PQB3EKQ6MBCXPTW4HB7SGMSTOTYMB3EFZX2573OFCQI6PSOEKCSQC","Use thread-local cGH structures for multi-threading\n"],["RCLGQ2LZMFVPBPTU2G55DJ6HZPOGGTPZRZCY54VGP6YLHANJ2LAQC","Move I/O to driver. WaveToy is now driver-independent.\n"],["WE6MDRN5SPK3THM4COLQFE3IUWBCQ5ZYUIAUCBJAZVEMMOVTNBOAC","Synchronize in the driver\n"],["3KQ5ZQE45TNGATMW4R4NHXVBULGOXHF7JYC53BZL2LNDQ2V7C2CAC","New parameter out_every\n"]],"deps":["WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC"],"known":["722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC","ORAAQXS3UNKXYDJBCTHNEIDJIZDHWMM5EVCZKVMFRKQK2NIQNJGAC","BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC","AEVGZIZEUIC52MCK3J4V547YEV2R4YQL3JUJW7FSP4R34PSZ43DAC","UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC","PQB3EKQ6MBCXPTW4HB7SGMSTOTYMB3EFZX2573OFCQI6PSOEKCSQC","RTNZAS3UPI6GG3KY4Z5WVXJ4R2YF5427BB6WAV3GHRS5W7XPOSUQC","WE6MDRN5SPK3THM4COLQFE3IUWBCQ5ZYUIAUCBJAZVEMMOVTNBOAC","RCLGQ2LZMFVPBPTU2G55DJ6HZPOGGTPZRZCY54VGP6YLHANJ2LAQC","3KQ5ZQE45TNGATMW4R4NHXVBULGOXHF7JYC53BZL2LNDQ2V7C2CAC"]},"hunks":[{"Edit":{"inode":{"change":3,"pos":17976},"path":"AMReX/interface.ccl","line":4,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":18035},"to":{"change":3,"start":18035,"end":18076},"introduced_by":3}],"inode":{"change":3,"pos":17976}}},"contents":[{"Del":{"text":"","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:18035"}},{"Del":{"text":"INCLUDES HEADER: AMReX.hxx IN AMReX.hxx","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:18075"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":1,"ins":{"up_context":[{"change":3,"pos":15972}],"down_context":[{"change":3,"pos":24}],"flag":"BLOCK","start":0,"end":22,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":15972},"to":{"change":3,"start":15973,"end":15994},"introduced_by":3}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":"#include ","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:21"}}],"del_contents":[{"Del":{"text":"#include ","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:15993"}}]}},{"Edit":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":144,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":981},"to":{"change":3,"start":981,"end":1032},"introduced_by":3}],"inode":{"change":3,"pos":15972}}},"contents":[{"Del":{"text":" groupdata.numtimelevels = group.numtimelevels;","pos":"UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC:1031"}}]}},{"Replacement":{"inode":{"change":3,"pos":15972},"path":"AMReX/src/driver.cxx","line":145,"ins":{"up_context":[{"change":3,"pos":1033}],"down_context":[{"change":3,"pos":1200}],"flag":"BLOCK","start":23,"end":292,"inode":{"change":3,"pos":15972}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1033},"to":{"change":3,"start":1033,"end":1064},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1064},"to":{"change":2,"start":766,"end":904},"introduced_by":2}],"inode":{"change":3,"pos":15972}},"ins_contents":[{"Add":{"text":" // Allocate grid hierarchies","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:55"}},{"Add":{"text":" groupdata.mfab.resize(group.numtimelevels);","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:103"}},{"Add":{"text":" for (int tl = 0; tl < int(groupdata.mfab.size()); ++tl) {","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:165"}},{"Add":{"text":" groupdata.mfab.at(tl) = make_unique(","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:218"}},{"Add":{"text":" level.grids, level.dmap, groupdata.numvars, ghost_size);","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:285"}},{"Add":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:291"}}],"del_contents":[{"Del":{"text":" // Allocate grid hierarchy","pos":"UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC:1063"}},{"Del":{"text":" groupdata.mfab =","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:786"}},{"Del":{"text":" MultiFab(level.grids, level.dmap,","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:828"}},{"Del":{"text":" groupdata.numvars * groupdata.numtimelevels, ghost_size);","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:903"}}]}},{"FileMove":{"meta":{"basename":"driver.hxx","metadata":420},"path":"AMReX/src/driver.hxx","to_path":null,"old":[{"basename":"AMReX.hxx","metadata":420}],"up":[{"change":3,"pos":15096}],"down":[{"change":3,"pos":15275}],"show_perms":false}},{"Replacement":{"inode":{"change":3,"pos":15275},"path":"AMReX/src/driver.hxx","line":1,"ins":{"up_context":[{"change":3,"pos":15275}],"down_context":[{"change":3,"pos":15312}],"flag":"BLOCK","start":306,"end":344,"inode":{"change":3,"pos":15275}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":15275},"to":{"change":3,"start":15276,"end":15312},"introduced_by":3}],"inode":{"change":3,"pos":15275}},"ins_contents":[{"Add":{"text":"#ifndef DRIVER_HXX","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:324"}},{"Add":{"text":"#define DRIVER_HXX","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:343"}}],"del_contents":[{"Del":{"text":"#ifndef AMREX_HXX","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:15293"}},{"Del":{"text":"#define AMREX_HXX","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:15311"}}]}},{"Replacement":{"inode":{"change":3,"pos":15275},"path":"AMReX/src/driver.hxx","line":42,"ins":{"up_context":[{"change":2,"pos":199}],"down_context":[{"change":2,"pos":245}],"flag":"BLOCK","start":345,"end":403,"inode":{"change":3,"pos":15275}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":199},"to":{"change":2,"start":199,"end":245},"introduced_by":2}],"inode":{"change":3,"pos":15275}},"ins_contents":[{"Add":{"text":" vector > mfab; // [time level]","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:402"}}],"del_contents":[{"Del":{"text":" int numtimelevels;","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:223"}},{"Del":{"text":" MultiFab mfab;","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:244"}}]}},{"Replacement":{"inode":{"change":3,"pos":15275},"path":"AMReX/src/driver.hxx","line":53,"ins":{"up_context":[{"change":3,"pos":15931}],"down_context":[],"flag":"BLOCK","start":404,"end":433,"inode":{"change":3,"pos":15275}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":15931},"to":{"change":3,"start":15931,"end":15959},"introduced_by":3}],"inode":{"change":3,"pos":15275}},"ins_contents":[{"Add":{"text":"#endif // #ifndef DRIVER_HXX","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:432"}}],"del_contents":[{"Del":{"text":"#endif // #ifndef AMREX_HXX","pos":"722HZ7UFINNE3YKSYKP2NHZ5XEG5QQLQHSKC7PREJZR3EX6RDYUAC:15958"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":1,"ins":{"up_context":[{"change":3,"pos":107}],"down_context":[{"change":3,"pos":129}],"flag":"BLOCK","start":434,"end":456,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":107},"to":{"change":3,"start":108,"end":129},"introduced_by":3}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":"#include ","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:455"}}],"del_contents":[{"Del":{"text":"#include ","pos":"RCLGQ2LZMFVPBPTU2G55DJ6HZPOGGTPZRZCY54VGP6YLHANJ2LAQC:128"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":34,"ins":{"up_context":[{"change":3,"pos":652}],"down_context":[{"change":2,"pos":946}],"flag":"BLOCK","start":457,"end":500,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":652},"to":{"change":2,"start":905,"end":946},"introduced_by":2}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" for (int gi = 0; gi < numgroups; ++gi) {","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:499"}}],"del_contents":[{"Del":{"text":" for (int gi = 0; gi < numgroups; ++gi)","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:945"}}]}},{"Edit":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":37,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":1058}],"down_context":[{"change":3,"pos":751}],"flag":"BLOCK","start":501,"end":566,"inode":{"change":3,"pos":107}}},"contents":[{"Add":{"text":" if (groupdata.mfab.size() > 0) {","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:539"}},{"Add":{"text":" const int tl = 0;","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:565"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":40,"ins":{"up_context":[{"change":3,"pos":752}],"down_context":[{"change":3,"pos":1083}],"flag":"BLOCK","start":567,"end":997,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":752},"to":{"change":2,"start":1059,"end":1471},"introduced_by":2}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" string groupname = unique_ptr(CCTK_GroupName(gi)).get();","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:637"}},{"Add":{"text":" groupname = regex_replace(groupname, regex(\"::\"), \"-\");","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:701"}},{"Add":{"text":" for (auto &c : groupname)","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:735"}},{"Add":{"text":" c = tolower(c);","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:761"}},{"Add":{"text":" ostringstream buf;","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:788"}},{"Add":{"text":" buf << \"wavetoy/\" << groupname;","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:828"}},{"Add":{"text":" buf << \".rl\" << setw(2) << setfill('0') << level.level;","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:892"}},{"Add":{"text":" buf << \".it\" << setw(6) << setfill('0') << cctk_iteration;","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:959"}},{"Add":{"text":" string filename = buf.str();","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:996"}}],"del_contents":[{"Del":{"text":" string groupname = unique_ptr(CCTK_GroupName(gi)).get();","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1127"}},{"Del":{"text":" groupname = regex_replace(groupname, regex(\"::\"), \"-\");","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1189"}},{"Del":{"text":" for (auto &c : groupname)","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1221"}},{"Del":{"text":" c = tolower(c);","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1245"}},{"Del":{"text":" ostringstream buf;","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1270"}},{"Del":{"text":" buf << \"wavetoy/\" << groupname;","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1308"}},{"Del":{"text":" buf << \".rl\" << setw(2) << setfill('0') << level.level;","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1370"}},{"Del":{"text":" buf << \".it\" << setw(6) << setfill('0') << cctk_iteration;","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1435"}},{"Del":{"text":" string filename = buf.str();","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1470"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":50,"ins":{"up_context":[{"change":3,"pos":1084}],"down_context":[{"change":2,"pos":1609}],"flag":"BLOCK","start":998,"end":1050,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1084},"to":{"change":2,"start":1472,"end":1609},"introduced_by":2}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" Vector varnames(groupdata.numvars);","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1049"}}],"del_contents":[{"Del":{"text":" Vector varnames(groupdata.numvars * groupdata.numtimelevels);","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1547"}},{"Del":{"text":" for (int tl = 0; tl < groupdata.numtimelevels; ++tl) {","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1608"}}]}},{"Replacement":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":56,"ins":{"up_context":[{"change":2,"pos":1816}],"down_context":[{"change":2,"pos":1879}],"flag":"BLOCK","start":1051,"end":1089,"inode":{"change":3,"pos":107}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":1816},"to":{"change":2,"start":1816,"end":1879},"introduced_by":2}],"inode":{"change":3,"pos":107}},"ins_contents":[{"Add":{"text":" varnames.at(n) = buf.str();","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1088"}}],"del_contents":[{"Del":{"text":" varnames.at(tl * groupdata.numvars + n) = buf.str();","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1878"}}]}},{"Edit":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":58,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":1889}],"down_context":[{"change":3,"pos":1475}],"flag":"BLOCK","start":1090,"end":1349,"inode":{"change":3,"pos":107}}},"contents":[{"Add":{"text":"","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1090"}},{"Add":{"text":" // TODO: Output all levels into a single file","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1144"}},{"Add":{"text":" // TODO: Output all groups into a single file","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1198"}},{"Add":{"text":" WriteSingleLevelPlotfile(filename, *groupdata.mfab.at(tl), varnames,","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1275"}},{"Add":{"text":" level.geom, cctk_time, cctk_iteration);","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1348"}}]}},{"Edit":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":64,"atom":{"EdgeMap":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1489},"to":{"change":3,"start":1489,"end":1490},"introduced_by":3},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1490},"to":{"change":2,"start":1890,"end":2238},"introduced_by":2}],"inode":{"change":3,"pos":107}}},"contents":[{"Del":{"text":"","pos":"RCLGQ2LZMFVPBPTU2G55DJ6HZPOGGTPZRZCY54VGP6YLHANJ2LAQC:1489"}},{"Del":{"text":" // TODO: Output only current time level. This might require having one","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1966"}},{"Del":{"text":" // mfab per time level","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:1995"}},{"Del":{"text":" // TODO: Output all levels into a single file","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:2047"}},{"Del":{"text":" // TODO: Output everything into a single file","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:2099"}},{"Del":{"text":" WriteSingleLevelPlotfile(filename, groupdata.mfab, varnames, level.geom,","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:2178"}},{"Del":{"text":" cctk_time, cctk_iteration);","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:2237"}}]}},{"Edit":{"inode":{"change":3,"pos":107},"path":"AMReX/src/io.cxx","line":67,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":2284}],"down_context":[{"change":3,"pos":1819}],"flag":"BLOCK","start":1350,"end":1354,"inode":{"change":3,"pos":107}}},"contents":[{"Add":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1353"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":1,"ins":{"up_context":[{"change":3,"pos":531}],"down_context":[{"change":3,"pos":553}],"flag":"BLOCK","start":1355,"end":1377,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":531},"to":{"change":3,"start":532,"end":553},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":"#include ","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1376"}}],"del_contents":[{"Del":{"text":"#include ","pos":"BVR7DVINVPQG7PA6Z7QYVYNQ43YZL7XCC6AOMSMWMGAAB2Q43STAC:552"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":20,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":767}],"down_context":[{"change":3,"pos":767}],"flag":"BLOCK","start":1378,"end":1399,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":"#include ","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1398"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":198,"ins":{"up_context":[{"change":2,"pos":2865}],"down_context":[{"change":3,"pos":1551}],"flag":"BLOCK","start":1400,"end":1587,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":2,"pos":2865},"to":{"change":3,"start":1381,"end":1551},"introduced_by":2},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1381},"to":{"change":3,"start":1381,"end":1551},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" for (int tl = 0; tl < int(groupdata.mfab.size()); ++tl) {","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1461"}},{"Add":{"text":" const Array4 &vars = groupdata.mfab.at(tl)->array(mfi);","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1534"}},{"Add":{"text":" for (int n = 0; n < groupdata.numvars; ++n) {","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1586"}}],"del_contents":[{"Del":{"text":" const Array4 &vars = groupdata.mfab.array(mfi);","pos":"UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC:1443"}},{"Del":{"text":" for (int tl = 0; tl < groupdata.numtimelevels; ++tl)","pos":"UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC:1500"}},{"Del":{"text":" for (int n = 0; n < groupdata.numvars; ++n)","pos":"UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC:1550"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":202,"ins":{"up_context":[{"change":3,"pos":1607}],"down_context":[{"change":3,"pos":1681}],"flag":"BLOCK","start":1588,"end":1651,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1607},"to":{"change":3,"start":1607,"end":1681},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" vars.ptr(imin.x, imin.y, imin.z, n);","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1636"}},{"Add":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1644"}},{"Add":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1650"}}],"del_contents":[{"Del":{"text":" vars.ptr(imin.x, imin.y, imin.z, tl * groupdata.numvars + n);","pos":"UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC:1680"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":221,"ins":{"up_context":[{"change":2,"pos":3043}],"down_context":[{"change":3,"pos":1797}],"flag":"BLOCK","start":1652,"end":1714,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"","flag":"DELETED","from":{"change":2,"pos":3043},"to":{"change":3,"start":1740,"end":1797},"introduced_by":2},{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":1740},"to":{"change":3,"start":1740,"end":1797},"introduced_by":3}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" for (int tl = 0; tl < int(groupdata.mfab.size()); ++tl) {","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1713"}}],"del_contents":[{"Del":{"text":" for (int tl = 0; tl < groupdata.numtimelevels; ++tl)","pos":"UUGQGVC4WEKN64WAP7F5QPS2UHGQB5ZLMFRIYNWKMIEBDO3QRX4AC:1796"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":224,"atom":{"NewVertex":{"up_context":[{"change":3,"pos":1912}],"down_context":[{"change":3,"pos":1912}],"flag":"BLOCK","start":1715,"end":1721,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1720"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":385,"ins":{"up_context":[{"change":3,"pos":2170}],"down_context":[{"change":2,"pos":3157}],"flag":"BLOCK","start":1722,"end":1769,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":2170},"to":{"change":2,"start":3112,"end":3157},"introduced_by":2}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" for (auto &restrict level : ghext->levels) {","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1768"}}],"del_contents":[{"Del":{"text":" for (auto &restrict level : ghext->levels)","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:3156"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":387,"ins":{"up_context":[{"change":2,"pos":3212}],"down_context":[{"change":2,"pos":3462}],"flag":"BLOCK","start":1770,"end":2071,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":3212},"to":{"change":2,"start":3212,"end":3462},"introduced_by":2}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" const int ntls = groupdata.mfab.size();","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1815"}},{"Add":{"text":" if (ntls > 1) {","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1837"}},{"Add":{"text":" unique_ptr tmp = move(groupdata.mfab.at(ntls - 1));","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1907"}},{"Add":{"text":" for (int tl = ntls - 1; tl > 0; --tl)","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:1953"}},{"Add":{"text":" groupdata.mfab.at(tl) = move(groupdata.mfab.at(tl - 1));","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2020"}},{"Add":{"text":" groupdata.mfab.at(0) = move(tmp);","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2062"}},{"Add":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2070"}}],"del_contents":[{"Del":{"text":" for (int tl = groupdata.numtimelevels - 1; tl > 0; --tl)","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:3274"}},{"Del":{"text":" MultiFab::Copy(groupdata.mfab, groupdata.mfab,","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:3329"}},{"Del":{"text":" (tl - 1) * groupdata.numvars, tl * groupdata.numvars,","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:3406"}},{"Del":{"text":" groupdata.numvars, ghost_size);","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:3461"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":395,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":3468}],"down_context":[{"change":3,"pos":5302}],"flag":"BLOCK","start":2072,"end":2076,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2075"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":452,"ins":{"up_context":[{"change":2,"pos":3520}],"down_context":[{"change":2,"pos":3573}],"flag":"BLOCK","start":2077,"end":2137,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":3520},"to":{"change":2,"start":3520,"end":3573},"introduced_by":2}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" MultiFab &mfab = *level.groupdata.at(0).mfab.at(0);","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2136"}}],"del_contents":[{"Del":{"text":" MultiFab &mfab = level.groupdata.at(0).mfab;","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:3572"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":492,"ins":{"up_context":[{"change":3,"pos":392}],"down_context":[{"change":2,"pos":4086}],"flag":"BLOCK","start":2138,"end":2185,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":392},"to":{"change":2,"start":4041,"end":4086},"introduced_by":2}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" for (auto &restrict level : ghext->levels) {","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2184"}}],"del_contents":[{"Del":{"text":" for (auto &restrict level : ghext->levels)","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:4085"}}]}},{"Replacement":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":496,"ins":{"up_context":[{"change":2,"pos":4211}],"down_context":[{"change":2,"pos":4311}],"flag":"BLOCK","start":2186,"end":2515,"inode":{"change":3,"pos":531}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":2,"pos":4211},"to":{"change":2,"start":4211,"end":4311},"introduced_by":2}],"inode":{"change":3,"pos":531}},"ins_contents":[{"Add":{"text":" // We always sync all directions.","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2225"}},{"Add":{"text":" // If there is more than one time level, then we don't sync the","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2295"}},{"Add":{"text":" // oldest.","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2312"}},{"Add":{"text":" int ntls = groupdata.mfab.size();","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2352"}},{"Add":{"text":" int sync_tl = ntls > 1 ? ntls - 1 : ntls;","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2400"}},{"Add":{"text":" for (int tl = 0; tl < sync_tl; ++tl)","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2443"}},{"Add":{"text":" groupdata.mfab.at(tl)->FillBoundary(level.geom.periodicity());","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2514"}}],"del_contents":[{"Del":{"text":" // we always sync all directions","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:4249"}},{"Del":{"text":" groupdata.mfab.FillBoundary(level.geom.periodicity());","pos":"WASO7G5FJXRXWNH2U2FLUNEKU6VE63OI3HUYP64BVD4LMD6KE7OQC:4310"}}]}},{"Edit":{"inode":{"change":3,"pos":531},"path":"AMReX/src/schedule.cxx","line":504,"atom":{"NewVertex":{"up_context":[{"change":2,"pos":4317}],"down_context":[{"change":3,"pos":613}],"flag":"BLOCK","start":2516,"end":2520,"inode":{"change":3,"pos":531}}},"contents":[{"Add":{"text":" }","pos":"UZAKARMGORRQG733ZUPJOEGL5FG243I32NCC2SRSFDCZKUQ5A52QC:2519"}}]}},{"Replacement":{"inode":{"change":3,"pos":37},"path":"WaveToyAMReX/src/wavetoy.cxx","line":39,"ins":{"up_context":[{"change":3,"pos":4712}],"down_context":[{"change":3,"pos":4979}],"flag":"BLOCK","start":2521,"end":2607,"inode":{"change":3,"pos":37}},"del":{"edges":[{"previous":"BLOCK","flag":"BLOCK | DELETED","from":{"change":3,"pos":4712},"to":{"change":3,"start":2830,"end":2912},"introduced_by":3}],"inode":{"change":3,"pos":37}},"ins_contents":[{"Add":{"text":" for (int k = 0; 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