added check_change_avianz_species! function to Labels.jl

Dependencies

• [2] 2O6SHIVY added avianz_of_raven function to Labels.jl
• [3] 2UBDFCJH new files tracked

Change contents

• replacement in src/Labels.jl at line 5
  [3.54]→[3.54:111](∅→∅)
  − using CSV, DataFrames, Glob, Random, DBInterface, DuckDB
  [3.54]

  [3.111]
  + using CSV, DataFrames, Glob, Random, DBInterface, DuckDB, JSON3
• replacement in src/Labels.jl at line 168
  [2.272]→[2.272:398](∅→∅)
  − df=DataFrame(CSV.File(f))

  − data=Any[Dict([("Operator", "D"), ("Reviewer", "D"), ("Duration", 60.0)])]

  − labels=Any[]
  [2.272]

  [2.398]
  + df = DataFrame(CSV.File(f))

  + data = Any[Dict([("Operator", "D"), ("Reviewer", "D"), ("Duration", 60.0)])]

  + labels = Any[]
• replacement in src/Labels.jl at line 172
  [2.425]→[2.425:724](∅→∅)
  − label=

  − [

  − row."Begin Time (s)",

  − row."End Time (s)",

  − floor(Int, row."Low Freq (Hz)"),

  − ceil(Int, row."High Freq (Hz)"),

  − [

  − Dict([("filter", "M"), ("species", row.Species), ("certainty", 100)])

  − ]
  [2.425]

  [2.724]
  + label = [

  + row."Begin Time (s)",

  + row."End Time (s)",

  + floor(Int, row."Low Freq (Hz)"),

  + ceil(Int, row."High Freq (Hz)"),

  + [Dict([("filter", "M"), ("species", row.Species), ("certainty", 100)])],
• replacement in src/Labels.jl at line 182
  [2.797]→[2.797:821](∅→∅)
  − avianzf=f * ".data"
  [2.797]

  [2.821]
  + avianzf = f * ".data"
• replacement in src/Labels.jl at line 188
  [2.938]→[3.4517:4520](∅→∅),[3.4517]→[3.4517:4520](∅→∅)
  − end
  [2.938]
  + end

  +

  + # Check then mutate all AviaNZ .data labels (Species column)

  + # using JSON3

  + # a=glob("*.WAV.data")

  + # check_and_change_labels!(a, "somethning", "something")

  +

  + function check_change_avianz_species!(list::Vector{String}, wrong::String, right::String)

  + function mutate_avianz_dict!(dct, wrong::String, right::String)

  + didmutate = false

  + data = copy(dct)

  + for (index1, item1) in enumerate(data[2:end])

  + for (index2, item2) in enumerate(item1[5])

  + if item2[:species] == wrong

  + data[index1+1][5][index2][:species] = right

  + didmutate = true

  + end

  + end

  + end

  + return (didmutate, data)

  + end

  + function read_avianz_data(f)

  + json_string = read(f, String)

  + x = JSON3.read(json_string)

  + return x

  + end

  + function write_new_file!(f, payload)

  + cp(f, "$f.backup")

  + open(f, "w") do io

  + JSON3.write(io, payload)

  + end

  + end

  + for file in list

  + x = read_avianz_data(file)

  + if length(x) >= 2 #ignores empty .data files

  + didmutate, payload = mutate_avianz_dict!(x, wrong, right)

  + if didmutate == true

  + try

  + write_new_file!(file, payload)

  + catch

  + @warn "Could not write file or backup: $file"

  + end

  + end

  + end

  + end

  + end