quietlight/Skraak - Change QPBH7QWC56HIYUJCCHKDNBN2D346UN3IOXDCIKSAATLIATLSW3YQC

added MLBaste for confusion matrix, f1, roc, must still remove freq tables

Created by quietlight on March 2, 2024

QPBH7QWC56HIYUJCCHKDNBN2D346UN3IOXDCIKSAATLIATLSW3YQC

Dependencies

In channels

main

Change contents

Replacement in src/Train.jl at line 27 [4.335620]

B:BD[4.336198] → [5.6:122]

B:BD[5.122] → [2.6:61]

glob_pattern = "kiwi_set_*/*/[K]/*.png" #from SSD2/PrimaryDataset 7758648 hard coded a random selection of not, 1:1
train("K1-8_Colour", 20, glob_pattern, true, 0.90, 64)

[4.336198]

[6.0]

glob_pattern = "original_set/*/[N,K]/*.png" #from SSD2/PrimaryDataset 7758648 hard coded a random selection of not, 1:1
train("K1-9_original_set", 20, glob_pattern, true, 0.90, 64)

Replacement in src/Train.jl at line 51 [4.335620]

B:BD[4.336948] → [3.6:69]

∅:D[3.69] → [5.493:494]

B:BD[5.493] → [5.493:494]

B:BD[5.494] → [3.70:206]

    images = glob(glob_pattern) |> shuffle! #|> x -> x[1:1000]
    #images2 = glob("kiwi_set_*/*/N/*.png") |> shuffle! |> x -> x[1:(length(images1))]
    #images = vcat(images1, images2) |> shuffle!

[4.336948]

[4.337010]

    images = glob(glob_pattern) #|> shuffle! |> x -> x[1:1000]

Replacement in src/Train.jl at line 256 [4.335620]
B:BD[4.343261] → [4.343261:343285]
```
function evaluate(m, d)
```
[4.343261]
[4.343285]
```
function evaluate(m, d, c=classes)
```

Replacement in src/Train.jl at line 270 [4.335620]

B:BD[4.343579] → [4.343579:343702]

        freqtable(DataFrame(targets = actual, predicts = pred), :targets, :predicts)
    return accuracy, confusion_matrix

[4.343579]

[4.343702]

        MLBase.confusmat(c, actual, pred)
        #freqtable(DataFrame(targets = actual, predicts = pred), :targets, :predicts)
    r=roc(actual, pred)
    return accuracy, confusion_matrix, r

Replacement in src/Train.jl at line 304 [4.335620]

B:BD[4.344368] → [4.344368:344472]

    @time eval, vcm = evaluate(model, test)
    @info "warm up" accuracy = eval
    @info "warm up" vcm

[4.344368]

[4.344472]

    @time eval, vcm, vroc = evaluate(model, test)
    @info "warm up accuracy" accuracy = eval
    @info "warm up confusion matrix" vcm
    @info "warm up f1" MLBase.f1score(vroc)
    @info "warm up roc" vroc

Replacement in src/Train.jl at line 316 [4.335620]

B:BD[4.344691] → [4.344691:344774]

        @time metric_train, train_confusion_matrix = evaluate(model, train_sample)

[4.344691]

[4.344774]

        @time metric_train, train_confusion_matrix, train_roc = evaluate(model, train_sample)

Insertion in src/Train.jl at line 320 [4.335620]

[4.344895]

        @info "warm up f1" MLBase.f1score(train_roc)
        @info "warm up roc" train_roc

Replacement in src/Train.jl at line 323 [4.335620]

B:BD[4.344896] → [4.344896:344969]

        @time metric_test, test_confusion_matrix = evaluate(model, test)

[4.344896]

[4.344969]

        @time metric_test, test_confusion_matrix, test_roc = evaluate(model, test)

Insertion in src/Train.jl at line 326 [4.335620]

[4.345056]

        f_metric = MLBase.f1score(train_roc)
        @info "warm up f1" f_metric
        @info "warm up roc" train_roc

Replacement in src/Train.jl at line 330 [4.335620]

B:BD[4.345057] → [4.345057:345118]

        metric_test > a && begin
            a = metric_test

[4.345057]

[4.345118]

        f_metric > a && begin
            a = f_metric

Insertion in Project.toml at line 24 [4.385246]
[4.386213]
[4.386213]
```
MLBase = "f0e99cf1-93fa-52ec-9ecc-5026115318e0"
```

Replacement in Manifest.toml at line 5 [7.10259813]

B:BD[7.10259938] → [5.2121:2179]

project_hash = "202275c7aad89ac52ca5906438f1043e7751e564"

[7.10259938]

[8.1017]

project_hash = "812b8675adee92e263362ac5fdcc45ef3e56ed90"

Replacement in Manifest.toml at line 19 [7.10259813]

B:BD[5.2200] → [5.2200:2375]

deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"]
git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f"

[5.2200]

[5.2375]

deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"]
git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425"

Replacement in Manifest.toml at line 22 [7.10259813]
B:BD[5.2421] → [5.2421:2440]
```
version = "0.1.35"
```
[5.2421]
[8.1348]
```
version = "0.1.36"
```
Insertion in Manifest.toml at line 29 [7.10259813]
[5.2649]
[5.2649]
```
    AccessorsUnitfulExt = "Unitful"
```
Insertion in Manifest.toml at line 37 [7.10259813]
[5.2962]
[5.2962]
```
    Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
```

Replacement in Manifest.toml at line 136 [7.10259813]

B:BD[7.10260707] → [8.5414:5473]

git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918"

[7.10260707]

[7.10260766]

git-tree-sha1 = "a44910ceb69b0d44fe262dd451ab11ead3ed0be8"

Replacement in Manifest.toml at line 138 [7.10259813]
B:BD[7.10260812] → [8.5474:5494]
```
version = "0.10.12"
```
[7.10260812]
[8.5494]
```
version = "0.10.13"
```

Replacement in Manifest.toml at line 212 [7.10259813]

B:BD[8.8476] → [5.4125:4184]

git-tree-sha1 = "ad25e7d21ce10e01de973cdc68ad0f850a953c52"

[8.8476]

[8.8535]

git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b"

Replacement in Manifest.toml at line 214 [7.10259813]
B:BD[8.8581] → [5.4185:4204]
```
version = "1.21.1"
```
[8.8581]
[8.8600]
```
version = "1.23.0"
```

Replacement in Manifest.toml at line 269 [7.10259813]

B:BD[8.10536] → [5.4552:4611]

git-tree-sha1 = "75bd5b6fc5089df449b5d35fa501c846c9b6549b"

[8.10536]

[7.10261249]

git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80"

Replacement in Manifest.toml at line 271 [7.10259813]
B:BD[7.10261295] → [5.4612:4631]
```
version = "4.12.0"
```
[7.10261295]
[7.10261314]
```
version = "4.14.0"
```
Replacement in Manifest.toml at line 342 [7.10259813]
B:BD[7.10262389] → [7.10262389:10262448]
```
git-tree-sha1 = "9b0dc525a052b9269ccc5f7f04d5b3639c65bca5"
```
[7.10262389]
[7.10262448]
```
git-tree-sha1 = "6f93ab5557fa0ffd02e3d751186f329ac21da791"
```
Replacement in Manifest.toml at line 344 [7.10259813]
B:BD[7.10262494] → [7.10262494:10262512]
```
version = "2.5.0"
```
[7.10262494]
[7.10262512]
```
version = "2.6.0"
```

Replacement in Manifest.toml at line 371 [7.10259813]

B:BD[7.10263456] → [8.12133:12192]

git-tree-sha1 = "ac67408d9ddf207de5cfa9a97e114352430f01ed"

[7.10263456]

[7.10263515]

git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2"

Replacement in Manifest.toml at line 373 [7.10259813]
B:BD[7.10263561] → [8.12193:12213]
```
version = "0.18.16"
```
[7.10263561]
[7.10263581]
```
version = "0.18.17"
```

Replacement in Manifest.toml at line 435 [7.10259813]

B:BD[8.13365] → [8.13365:13424]

git-tree-sha1 = "01826e41eabf087414b1075e22395c87b2f2c97b"

[8.13365]

[7.10264953]

git-tree-sha1 = "66d082ffb6d95653b10463c3a5316f2b720adf63"

Replacement in Manifest.toml at line 437 [7.10259813]
B:BD[7.10264999] → [8.13425:13443]
```
version = "0.9.1"
```
[7.10264999]
[7.10265017]
```
version = "0.10.0"
```

Replacement in Manifest.toml at line 441 [7.10259813]

B:BD[7.10265083] → [8.13444:13503]

git-tree-sha1 = "08f5e30dd60123ec5e665018ed2a0b1120be448f"

[7.10265083]

[7.10265142]

git-tree-sha1 = "6e84609071cd63aa1853912c3e33c52adda0c3d8"

Replacement in Manifest.toml at line 443 [7.10259813]
B:BD[7.10265188] → [8.13504:13524]
```
version = "0.9.2+0"
```
[7.10265188]
[7.10265208]
```
version = "0.10.0+0"
```

Replacement in Manifest.toml at line 537 [7.10259813]

B:BD[7.10266231] → [8.15851:15910]

git-tree-sha1 = "94751652e8a52946b2d1a4646bdfc5202e71f964"

[7.10266231]

[7.10266290]

git-tree-sha1 = "cd96db4ebe96ee1063ee1deddef318c6d5844cff"

Replacement in Manifest.toml at line 539 [7.10259813]
B:BD[7.10266336] → [8.15911:15929]
```
version = "0.4.4"
```
[7.10266336]
[7.10266354]
```
version = "0.5.2"
```

Replacement in Manifest.toml at line 549 [7.10259813]

B:BD[8.16371] → [5.5259:5318]

git-tree-sha1 = "39a9e46b4e92d5b56c0712adeb507555a2327240"

[8.16371]

[8.16430]

git-tree-sha1 = "fd7b23aa8013a7528563d429f6eaf406f60364ed"

Replacement in Manifest.toml at line 551 [7.10259813]
B:BD[8.16476] → [5.5319:5339]
```
version = "0.14.11"
```
[8.16476]
[8.16495]
```
version = "0.14.12"
```

Insertion in Manifest.toml at line 609 [7.10259813]

[8.18353]

[[deps.Ghostscript_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "43ba3d3c82c18d88471cfd2924931658838c9d8f"
uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b"
version = "9.55.0+4"

Replacement in Manifest.toml at line 634 [7.10259813]

B:BD[7.10267421] → [8.18987:19046]

git-tree-sha1 = "abbbb9ec3afd783a7cbd82ef01dcd088ea051398"

[7.10267421]

[7.10267480]

git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8"

Replacement in Manifest.toml at line 636 [7.10259813]
B:BD[7.10267526] → [8.19047:19066]
```
version = "1.10.1"
```
[7.10267526]
[8.19275]
```
version = "1.10.2"
```

Replacement in Manifest.toml at line 687 [7.10259813]

B:BD[8.22176] → [8.22176:22305]

deps = ["FileIO", "ImageCore", "ImageMagick_jll", "InteractiveUtils"]
git-tree-sha1 = "b0b765ff0b4c3ee20ce6740d843be8dfce48487c"

[8.22176]

[8.22305]

deps = ["FileIO", "ImageCore", "ImageMagick_jll", "InteractiveUtils", "Libdl", "Pkg", "Random"]
git-tree-sha1 = "5bc1cb62e0c5f1005868358db0692c994c3a13c6"

Replacement in Manifest.toml at line 690 [7.10259813]
B:BD[8.22351] → [8.22351:22369]
```
version = "1.3.0"
```
[8.22351]
[8.22369]
```
version = "1.2.1"
```

Replacement in Manifest.toml at line 693 [7.10259813]

B:BD[8.22395] → [8.22395:22536]

deps = ["JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "1c0a2295cca535fabaf2029062912591e9b61987"

[8.22395]

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deps = ["Artifacts", "Ghostscript_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "OpenJpeg_jll", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "d65554bad8b16d9562050c67e7223abf91eaba2f"

Replacement in Manifest.toml at line 696 [7.10259813]
B:BD[8.22582] → [8.22582:22606]
```
version = "6.9.10-12+3"
```
[8.22582]
[8.22606]
```
version = "6.9.13+0"
```

Replacement in Manifest.toml at line 790 [7.10259813]

B:BD[8.26450] → [5.7282:7341]

git-tree-sha1 = "581191b15bcb56a2aa257e9c160085d0f128a380"

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git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0"

Replacement in Manifest.toml at line 792 [7.10259813]

B:BD[8.26582] → [5.7342:7396]

version = "0.7.9"
weakdeps = ["Random", "Statistics"]

[8.26582]

[8.26626]

version = "0.7.10"
weakdeps = ["Random", "RecipesBase", "Statistics"]

Insertion in Manifest.toml at line 797 [7.10259813]
[5.7434]
[8.26662]
```
    IntervalSetsRecipesBaseExt = "RecipesBase"
```

Replacement in Manifest.toml at line 828 [7.10259813]

B:BD[8.27021] → [5.7603:7662]

git-tree-sha1 = "7c0008f0b7622c6c0ee5c65cbc667b69f8a65672"

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git-tree-sha1 = "5ea6acdd53a51d897672edb694e3cc2912f3f8a7"

Replacement in Manifest.toml at line 830 [7.10259813]
B:BD[8.27126] → [5.7663:7682]
```
version = "0.4.45"
```
[8.27126]
[7.10268687]
```
version = "0.4.46"
```

Replacement in Manifest.toml at line 852 [7.10259813]

B:BD[8.27423] → [8.27423:27482]

git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a"

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git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23"

Replacement in Manifest.toml at line 854 [7.10259813]
B:BD[8.27528] → [8.27528:27548]
```
version = "3.0.1+0"
```
[8.27528]
[7.10269054]
```
version = "3.0.2+0"
```

Replacement in Manifest.toml at line 870 [7.10259813]

B:BD[8.28160] → [5.7683:7742]

git-tree-sha1 = "4e0cb2f5aad44dcfdc91088e85dee4ecb22c791c"

[8.28160]

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git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b"

Replacement in Manifest.toml at line 872 [7.10259813]
B:BD[8.28265] → [5.7743:7762]
```
version = "0.9.16"
```
[8.28265]
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```
version = "0.9.17"
```

Replacement in Manifest.toml at line 888 [7.10259813]

B:BD[8.28753] → [5.7763:7822]

git-tree-sha1 = "9e70165cca7459d25406367f0c55e517a9a7bfe7"

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git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7"

Replacement in Manifest.toml at line 890 [7.10259813]
B:BD[8.28858] → [5.7823:7841]
```
version = "6.5.0"
```
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```
version = "6.6.0"
```

Replacement in Manifest.toml at line 898 [7.10259813]

B:BD[8.29054] → [5.7842:7901]

git-tree-sha1 = "114e3a48f13d4c18ddd7fd6a00107b4b96f60f9c"

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git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc"

Replacement in Manifest.toml at line 900 [7.10259813]
B:BD[8.29159] → [5.7902:7923]
```
version = "0.0.28+0"
```
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```
version = "0.0.29+0"
```

Replacement in Manifest.toml at line 955 [7.10259813]

B:BD[8.29946] → [8.29946:30110]

deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713"

[8.29946]

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deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a"

Replacement in Manifest.toml at line 958 [7.10259813]
B:BD[8.30156] → [8.30156:30176]
```
version = "4.4.0+0"
```
[8.30156]
[7.10270485]
```
version = "4.5.1+1"
```

Insertion in Manifest.toml at line 963 [7.10259813]

[7.10270613]

[7.10271015]


[[deps.LittleCMS_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll"]
git-tree-sha1 = "08ed30575ffc5651a50d3291beaf94c3e7996e55"
uuid = "d3a379c0-f9a3-5b72-a4c0-6bf4d2e8af0f"
version = "2.15.0+0"

Replacement in Manifest.toml at line 972 [7.10259813]
B:BD[7.10271112] → [7.10271112:10271171]
```
git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa"
```
[7.10271112]
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```
git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37"
```
Replacement in Manifest.toml at line 974 [7.10259813]
B:BD[7.10271217] → [7.10271217:10271236]
```
version = "0.3.26"
```
[7.10271217]
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```
version = "0.3.27"
```

Insertion in Manifest.toml at line 1001 [7.10259813]

[8.31082]

[[deps.MLBase]]
deps = ["IterTools", "Random", "Reexport", "StatsBase"]
git-tree-sha1 = "ac79beff4257e6e80004d5aee25ffeee79d91263"
uuid = "f0e99cf1-93fa-52ec-9ecc-5026115318e0"
version = "0.9.2"

Replacement in Manifest.toml at line 1093 [7.10259813]

B:BD[8.33221] → [5.8083:8142]

git-tree-sha1 = "d2811b435d2f571bdfdfa644bb806a66b458e186"

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git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221"

Replacement in Manifest.toml at line 1095 [7.10259813]
B:BD[8.33326] → [5.8143:8162]
```
version = "0.9.11"
```
[8.33326]
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```
version = "0.9.12"
```

Insertion in Manifest.toml at line 1199 [7.10259813]

[7.10273680]

[[deps.OpenJpeg_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libtiff_jll", "LittleCMS_jll", "libpng_jll"]
git-tree-sha1 = "8d4c87ffaf09dbdd82bcf8c939843e94dd424df2"
uuid = "643b3616-a352-519d-856d-80112ee9badc"
version = "2.5.0+0"

Replacement in Manifest.toml at line 1324 [7.10259813]
B:BD[7.10276133] → [7.10276133:10276192]
```
git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e"
```
[7.10276133]
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```
git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf"
```
Replacement in Manifest.toml at line 1326 [7.10259813]
B:BD[7.10276238] → [7.10276238:10276256]
```
version = "1.4.1"
```
[7.10276238]
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```
version = "1.4.2"
```

Replacement in Manifest.toml at line 1389 [7.10259813]

B:BD[8.39388] → [8.39388:39447]

git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a"

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[8.39447]

git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7"

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B:BD[8.39493] → [8.39493:39511]
```
version = "1.6.2"
```
[8.39493]
[8.39511]
```
version = "1.7.0"
```

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B:BD[8.43518] → [5.9621:9680]

git-tree-sha1 = "7b0e9c14c624e435076d19aea1e5cbdec2b9ca37"

[8.43518]

[8.43577]

git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2"

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B:BD[8.43623] → [5.9681:9699]
```
version = "1.9.2"
```
[8.43623]
[8.43641]
```
version = "1.9.3"
```

Replacement in Manifest.toml at line 1598 [7.10259813]

B:BD[8.44324] → [8.44324:44419]

B:BD[8.44419] → [5.9700:9759]

deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"]
git-tree-sha1 = "1b0b1205a56dc288b71b1961d48e351520702e24"

[8.44324]

[8.44478]

deps = ["ConstructionBase", "DataAPI", "Tables"]
git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be"

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B:BD[8.44524] → [5.9760:9779]

version = "0.6.17"

[8.44524]

[8.44543]

version = "0.6.18"
weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"]
    [deps.StructArrays.extensions]
    StructArraysAdaptExt = "Adapt"
    StructArraysGPUArraysCoreExt = "GPUArraysCore"
    StructArraysSparseArraysExt = "SparseArrays"
    StructArraysStaticArraysExt = "StaticArrays"

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B:BD[8.48323] → [8.48323:48382]

git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b"

[8.48323]

[8.48382]

git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105"

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B:BD[8.48428] → [8.48428:48449]
```
version = "2.12.2+0"
```
[8.48428]
[8.48449]
```
version = "2.12.5+0"
```

Insertion in Manifest.toml at line 1787 [7.10259813]

[8.48642]

[7.10284099]


[[deps.XZ_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a"
uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
version = "5.6.0+0"

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B:BD[8.50100] → [8.50100:50159]

git-tree-sha1 = "93284c28274d9e75218a416c65ec49d0e0fcdf3d"

[8.50100]

[8.50159]

git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024"

Replacement in Manifest.toml at line 1842 [7.10259813]
B:BD[8.50205] → [8.50205:50226]
```
version = "1.6.40+0"
```
[8.50205]
[8.50226]
```
version = "1.6.43+0"
```

added MLBaste for confusion matrix, f1, roc, must still remove freq tables

Dependencies

In channels

Change contents

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