quietlight/Skraak - Change UTM4NN576ZBJR4WMEQBUP26FG2JLNLRAQQWZJSHGT6VH2ABYSDWAC

changes that were left on linux

Created by quietlight on November 10, 2024

UTM4NN576ZBJR4WMEQBUP26FG2JLNLRAQQWZJSHGT6VH2ABYSDWAC

Dependencies

In channels

main

Change contents

Replacement in src/Clips.jl at line 69 [4.12356]

B:BD[3.3871] → [3.3871:3963]

        x -> Skraak.rename_column!(x, "1.0", "label") |> #can remove now, needs to be label

[3.3871]

[3.3963]

        x -> Skraak.rename_column!(x, "1.0", "label") |> #can remove now, for old opensounscape model needs to be label
        x -> rename_column!(x, "Kiwi", "label") |> #for new model Kiwi needs to read as label

Replacement in src/Clips.jl at line 331 [4.12356]

B:BD[5.105] → [6.2262:2388]

a=Glob.glob("*/*/preds-2024-08-29.csv")
b=Glob.glob("*/*/*/preds-2024-08-29.csv")
c=Glob.glob("*/*/*/*/preds-2024-08-29.csv")

[5.105]

[6.2388]

predictions = glob("*/*/preds-2024-10-21.csv")
For Kahurangi (1) Data
a=glob("Manu*/['m','X']*/*/preds_Kahurangi_1-2_ST_2024-10-29.csv")
b=glob("Manu*/['m','X']*/*/*/preds_Kahurangi_1-2_ST_2024-10-29.csv")
c=glob("Manu*/['m','X']*/*/*/*/preds_Kahurangi_1-2_ST_2024-10-29.csv")
predictions = [a ; b ; c]
a=glob("Manu*/['m','X']*/*/preds4_Kahurangi_1-2_2024-10-29.csv")
b=glob("Manu*/['m','X']*/*/*/preds4_Kahurangi_1-2_2024-10-29.csv")
c=glob("Manu*/['m','X']*/*/*/*/preds4_Kahurangi_1-2_2024-10-29.csv")
predictions = [a ; b ; c]
a=glob("Manu*/['m','X']*/*/preds3_Kahurangi_1-2_2024-10-29.csv")
b=glob("Manu*/['m','X']*/*/*/preds3_Kahurangi_1-2_2024-10-29.csv")
c=glob("Manu*/['m','X']*/*/*/*/preds3_Kahurangi_1-2_2024-10-29.csv")

Replacement in src/Clips.jl at line 348 [4.12356]

B:BD[6.2414] → [6.2414:2472]

## or
predictions = Glob.glob("*/*/preds-2024-10-21.csv")

[6.2414]

[5.478]


For Kahurangi (2) Data
predictions=glob("Manu*/m*/preds_Kahurangi_1-2_ST_2024-10-29.csv")
predictions=glob("Manu*/m*/preds4_Kahurangi_1-2_2024-10-29.csv")
predictions=glob("Manu*/m*/preds3_Kahurangi_1-2_2024-10-29.csv")
For Cobb
predictions=glob("Friends*/preds_Kahurangi_1-2_ST_2024-10-29.csv")
predictions=glob("Friends*/preds4_Kahurangi_1-2_2024-10-29.csv")
predictions=glob("Friends*/preds3_Kahurangi_1-2_2024-10-29.csv")
Flora
a=glob("*/*/preds_Kahurangi_1-2_ST_2024-10-31.csv")
b=glob("*/*/*/preds_Kahurangi_1-2_ST_2024-10-31.csv")
c=glob("*/*/*/*/preds_Kahurangi_1-2_ST_2024-10-31.csv")
predictions=[a;b;c]
# to delete empty preds.csv files, should be ok now with improved python script
for file in list
    size = stat(file).size
    if size < 10
        println("Deleting $file - $size")
        rm(file)
    end
end

Replacement in src/Clips.jl at line 376 [4.12356]
B:BD[6.2501] → [6.2501:2526]
```
make_clips_generic(file)
```
[6.2501]
[6.2526]
```
make_clips_generic(file, 1, Flora1_K1-2-ST, false)
```

Replacement in src/Clips.jl at line 382 [4.12356]

B:BD[7.2150] → [6.2546:2610]

function make_clips_generic(preds_path::String, label::Int = 1)

[7.2150]

[7.2553]

function make_clips_generic(
    preds_path::String,
    label::Int ##= 1, needs looking at here TODO
    id::String,
    unique_file_names = true,
)

Replacement in src/Clips.jl at line 402 [4.12356]

B:BD[7.3125] → [7.3125:3217]

        x -> Skraak.rename_column!(x, "1.0", "label") |> #can remove now, needs to be label

[7.3125]

[7.3217]

        x -> Skraak.rename_column!(x, "1.0", "label") |> #can remove now, for old opensoundscape kiwi model needs to be label
        x -> Skraak.rename_column!(x, "Kiwi", "label") |> #for new kiwi model needs to be label

Replacement in src/Clips.jl at line 412 [4.12356]

B:BD[7.3572] → [7.3572:3620]

        start_times = v[!, :start_time] |> sort

[7.3572]

[7.3620]

        start_times =
            v[!, :start_time] |> x ->
                dropmissing(x, disallowmissing = true) |> ######CHECK used to make cobb work
                sort

Replacement in src/Clips.jl at line 429 [4.12356]

B:BD[7.4088] → [2.10:304]

∅:D[2.304] → [7.4385:4488]

B:BD[7.4385] → [7.4385:4488]

B:BD[7.4488] → [7.4488:4523]

            ##p = replace(pth, "/" => "--") #replace / with -- including trailing /
            ##name = "$p$file_name-$(Int(floor(st/freq)))-$(Int(ceil(en/freq)))"
            name = "$file_name-$(Int(floor(st/freq)))-$(Int(ceil(en/freq)))" #leave off path, not necesaray if unique file names
            ##name = "$location-$h-$trip_date-$file_name-$(Int(floor(st/freq)))-$(Int(ceil(en/freq)))"
            f = "Clips_$(today())"

[7.4088]

[7.4523]

            if unique_file_names == true
                name = "$file_name-$(Int(floor(st/freq)))-$(Int(ceil(en/freq)))" #leave off path, not necesaray if unique file names
            else
                p = replace(pth, "/" => "--") #replace / with -- including trailing /
                name = "$p$file_name-$(Int(floor(st/freq)))-$(Int(ceil(en/freq)))"
            end
            f = "Clips_$id_$(today())"