apraga/org - Change ATAETUW24GAHZEG7L2WGUZCAQCE4SLKRZKUDJVOC26I3JAUWHX6AC

Notes: corrected table for zola

Created by Alexis Praga on February 24, 2024

ATAETUW24GAHZEG7L2WGUZCAQCE4SLKRZKUDJVOC26I3JAUWHX6AC

Dependencies

In channels

main

Change contents

File addition: typst.md (----------)

[3.2]

Définir un style global 
    #set figure(kind: table)
Pour les packages, il faut pra contre définir des fonctions
    #let cooltable = tablex.with(stroke: red)

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```
## Anelloviridae [[adn]{.smallcaps}]{.tag tag-name="adn"} {#anelloviridae}
```
[4.1423]
[4.1498]
```
## Anelloviridae (adn)
```
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```
## EBV [[adn]{.smallcaps}]{.tag tag-name="adn"} {#ebv}
```
[4.3955]
[4.4010]
```
## EBV (ADN)
```
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```
## HSV [[adn]{.smallcaps}]{.tag tag-name="adn"} {#hsv}
```
[4.7169]
[4.7224]
```
## HSV (adn)
```
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```
## VHA [[arn]{.smallcaps}]{.tag tag-name="arn"} {#vha}
```
[4.10806]
[4.10861]
```
## VHA (arn)
```
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```
## VHB [[adn]{.smallcaps}]{.tag tag-name="adn"} {#vhb}
```
[4.12312]
[4.12367]
```
## VHB (adn)
```
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```
## VHC [[arn]{.smallcaps}]{.tag tag-name="arn"} {#vhc}
```
[4.16614]
[4.16669]
```
## VHC (arn)
```
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```
## VHD [[arn]{.smallcaps}]{.tag tag-name="arn"} {#vhd}
```
[4.17365]
[4.17420]
```
## VHD (arn)
```
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```
## VZV [[adn]{.smallcaps}]{.tag tag-name="adn"} {#vzv}
```
[4.20611]
[4.20666]
```
## VZV (adn)
```
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```
## VZV [[adn]{.smallcaps}]{.tag tag-name="adn"} {#vzv-1}
```
[4.21429]
[4.21486]
```
## VZV (adn)
```

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![](/images/microbiologie/antibio-resistance.png) Résistance

[4.402613]

[4.402680]

![](../../images/microbiologie/antibio-resistance.png) Résistance

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```
![](/images/microbiologie/antibio-ribosome.png)
```
[4.403485]
[4.403538]
```
![](../../images/microbiologie/antibio-ribosome.png)
```

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                       Péni G/V                     Péni A                                       Peni A + inhib βlactamase         Peni M
  -------------------- ---------------------------- -------------------------------------------- --------------------------------- ---------------------
  Utile                Streptocoque                 idem + pneumocoque péniS                     idem + Staphylocoque metiS        Staphylocoque metiS
                       Corynebacterium              E. faecalis, Listeria monocytogenes          H. influenza + pénicillinase      
                       Diphteria                    Neisseria menigitidis                        Enterobactéries + pénicillinase   
                                                    Entérobactéries groupe 1                     BNG anaérobies                    
  Résistance nat       BGN                          Entérobactéries groupe 2, 3; P. aeruginosa                                     BGN
  Résistance acquise   Staphylocoque, pneumocoque   Staphylocoque +/- pneumocoque                                                  Staphylocoque metiR
                                                    H. influenza, N. gonorrhea                                                     
                                                    N. mengitidis

[4.404678]

[4.406080]

|                     |Péni G/V                    |Péni A                                      |Peni A + inhib βlactamase        |Peni M
| --------------------|----------------------------|--------------------------------------------|---------------------------------|---------------------
| Utile               |Streptocoque                |idem + pneumocoque péniS                    |idem + Staphylocoque metiS       |Staphylocoque metiS
|                     |Corynebacterium             |E. faecalis, Listeria monocytogenes         |H. influenza + pénicillinase     |
|                     |Diphteria                   |Neisseria menigitidis                       |Enterobactéries + pénicillinase  |
|                     |                            |Entérobactéries groupe 1                    |BNG anaérobies                   |
| Résistance nat      |BGN                         |Entérobactéries groupe 2, 3; P. aeruginosa  |                                 |BGN
| Résistance acquise  |Staphylocoque, pneumocoque  |Staphylocoque +/- pneumocoque               |                                 |Staphylocoque metiR
|                     |                            |H. influenza, N. gonorrhea                  |                                 |
|                     |                            |N. mengitidis                               |                                 |

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               C2G                                C3G orale (1)        C3G injectable
  ------------ ---------------------------------- -------------------- ---------------------------------
  Utile        Streptocoque, Staphylocoque metS   Streptocoque         Streptocoque (dont pneumocoque)
               Entérobactérie groupe 1            entérobactérie 1,2   Neisseria spp, entérobactérie
                                                                       Haemophilus
  Résistance   Listeria, entérocoque              idem                 idem
               Staphylocoque metiR                                     
               P. aeruginosa, intracellaire

[4.406130]

[4.406836]

|             |C2G                               |C3G orale (1)       |C3G injectable
|-------------|----------------------------------|--------------------|---------------------------------
| Utile       |Streptocoque, Staphylocoque metS  |Streptocoque        |Streptocoque (dont pneumocoque)
|             |Entérobactérie groupe 1           |entérobactérie 1,2  |Neisseria spp, entérobactérie
|             |                                  |                    |Haemophilus
| Résistance  |Listeria, entérocoque             |idem                |idem
|             |Staphylocoque metiR               |                    |
|             |P. aeruginosa, intracellaire      |                    |

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                         Carbapénème                                FQ                          Aminoside (2)
  ---------------------- ------------------------------------------ --------------------------- --------------------------------------
  Utile                  Entérobactérie, P. aeruginosa              Entérobactérie              Staphylocoque metiS
                         Entérocoque, Staphylocoque metiS           Intracellulaire             Listeria monocytogenes
                         Anaérobie                                  Staphylocoque metiS         BGN
                                                                    P. aeruginosa : ciproflox   Streptocoque, pneumocoque
  Résistance naturelle   P. aeruginosa, entérocoque: ertapénème !   entérocoque, L. monocyt     strepto, pneumo: **bithérapie amox**
                                                                    anaérobie                   anaérobie stricte
  Résistance acquise     carbapénémase                              SAMR, gonocoque (1)

[4.406882]

[4.407947]

|                       |Carbapénème                               |FQ                         |Aminoside (2)
| ----------------------|------------------------------------------|---------------------------|--------------------------------------
| Utile                 |Entérobactérie, P. aeruginosa             |Entérobactérie             |Staphylocoque metiS
|                       |Entérocoque, Staphylocoque metiS          |Intracellulaire            |Listeria monocytogenes
|                       |Anaérobie                                 |Staphylocoque metiS        |BGN
|                       |                                          |P. aeruginosa : ciproflox  |Streptocoque, pneumocoque
| Résistance naturelle  |P. aeruginosa, entérocoque: ertapénème !  |entérocoque, L. monocyt    |strepto, pneumo: **bithérapie amox**
|                       |                                          |anaérobie                  |anaérobie stricte
| Résistance acquise    |carbapénémase                             |SAMR, gonocoque (1)        |

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                        Macrolides (1)                  Lincosamide (2)    Métronidazole                             Glycopeptide (3)
  --------------------- ------------------------------- ------------------ ----------------------------------------- ----------------------------
  Utile                 Intracellulaire, streptocoque   Strepocoque        Anaérobie (sauf Acineto, cutibacterium)   Streptocoque, pneumocoque
                        Staphylocoque metiS             Staphylocoque      Parasite                                  Entérocoque, staphylocoque
                                                                                                                     metiS/metiR
                                                                                                                     Clostri
  Résistace naturelle   entérobactérie, P. aeruginosa   BGN, E. faecalis   Autres                                    BGN
  résistance acquise    staph, pneumocoque, strepo A    staph, strepto

[4.408160]

[4.409227]

|                     |Macrolides (1)                 |Lincosamide (2)   |Métronidazole                            |Glycopeptide (3)
|---------------------|-------------------------------|------------------|-----------------------------------------|----------------------------
|Utile                |Intracellulaire, streptocoque  |Strepocoque       |Anaérobie (sauf Acineto, cutibacterium)  |Streptocoque, pneumocoque
|                     |Staphylocoque metiS            |Staphylocoque     |Parasite                                 |Entérocoque, staphylocoque
|                     |                               |                  |                                         |metiS/metiR
|                     |                               |                  |                                         |Clostri
|Résistace naturelle  |entérobactérie, P. aeruginosa  |BGN, E. faecalis  |Autres                                   |BGN
|résistance acquise   |staph, pneumocoque, strepo A   |staph, strepto    |

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                            Pénicillinase   Pénicillinase déréprimée   Céphalosporinase   Céphalo. déréprimée   BLSE        Carbapénémase
  --------------- --------- --------------- -------------------------- ------------------ --------------------- ----------- ----------------
  amoxicilline    AMC       R               R                          R                  R                     R           R
  ticarcilline    TIC       R               R                                             R                     R           R
  piperacilline   PIP       I/R             R                                             R                     R           R
  amox+inhib β    AMC                       I/R                        R                  R                     **S/I/R**   R
  pipe/ticar      PCC/PTZ                   I/R                                           I/R                   **S/I/R**   R
  \+ inhib β                                                                                                                
  C1G             CF                        I/R                        R                  I/R                   R           R
  C2G             FOX                                                  I/R                I/R                               I/R
  C3G             CTX                                                  I/R                I/R                   I/R         S (OXA-48)/I/R
  C4G             FEP                                                                                           I/R         S (OXA-48)/I/R
  carbapénème                                                                                                               I/R

[4.409774]

[4.411484]

|               |Pénicillinase  |Pénicillinase déréprimée  |Céphalo sporinase  |Céphalo. déréprimée  |BLSE       |Carba pénémase
|---------------|---------------|--------------------------|------------------|---------------------|-----------|----------------
|amoxicilline   |R              |R                         |R                 |R                    |R          |R
|ticarcilline   |R              |R                         |                  |R                    |R          |R
|piperacilline  |I/R            |R                         |                  |R                    |R          |R
|amox+inhib β   |               |I/R                       |R                 |R                    |**S/I/R**  |R
|pipe/ticar     |               |I/R                       |                  |I/R                  |**S/I/R**  |R
|\+ inhib β     |               |                          |                  |                     |           |
|C1G            |               |I/R                       |R                 |I/R                  |R          |R
|C2G            |               |                          |I/R               |I/R                  |           |I/R
|C3G            |               |                          |I/R               |I/R                  |I/R        |S (OXA-48)/I/R
|C4G            |               |                          |                  |                     |I/R        |S (OXA-48)/I/R
|carbapénème    |               |                          |                  |                     |           |I/R

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-   C1G = céfalotine (CF)
-   C2G = céfoxitine (FOX)
-   C3G = céfixime (CFM), céfotaxime (CTX), ceftazidime (CAZ)
-   C4G = céfépime (FEP)

[4.411485]

[4.411631]

- AMX = amoxicilline
- TIC = ticarcilline
- PIP = piperacilline
- AMC = amox - acide clavulanique 
- C1G = céfalotine (CF)
- C2G = céfoxitine (FOX)
- C3G = céfixime (CFM), céfotaxime (CTX), ceftazidime (CAZ)
- C4G = céfépime (FEP)

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```
## [TODO]{.todo .TODO} Pseudomonas aeruginosa {#pseudomonas-aeruginosa}
```
[4.420534]
[4.420606]
```
##  Pseudomonas aeruginosa 
```
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```
### [TODO]{.todo .TODO} Strepto agalactiae {#strepto-agalactiae}
```
[4.426259]
[4.426324]
```
### Strepto agalactiae 
```
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```
## [TODO]{.todo .TODO} Haemophilus influenza {#haemophilus-influenza}
```
[4.434963]
[4.435033]
```
## Haemophilus influenza 
```
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```
![](/images/microbiologie/aerobies.png)
```
[4.435345]
[4.435390]
```
![](../../images/microbiologie/aerobies.png)
```
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```
![](/images/microbiologie/anaerobies.png)
```
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![](../../images/microbiologie/anaerobies.png)
```
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```
![](/images/microbiologie/autres.png)
```
[4.435439]
[4.435482]
```
![](../../images/microbiologie/autres.png)
```

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                   Catalase +          Catalase -
  ---------------- ------------------- ---------------
                   aérobies strictes   
  Cocci gram+      staph               strepto
  Bacille Gram +   Listeria            Lactobacillus
                   Corynebacterium     
                   Propionobacterium

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|                |Catalase +         |Catalase -
|----------------|-------------------|---------------
|                |aérobies strictes  |
|Cocci gram+     |staph              |strepto
|Bacille Gram +  |Listeria           |Lactobacillus
|                |Corynebacterium    |
|                |Propionobacterium  |

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  Oxydase +        Oxydase -
  ---------------- -----------
  Aeromonas        
  Bordetella       
  Branhamella      
  Brucella         
  Burkholderia     
  Campylobacter    
  Flavobacterium   
  Moraxella        
  Neisseria        staph
  Pasteurella      
  Plesiomonas      
  Pseudomonas      
  Vibrio

[4.436035]

[4.436360]

|Oxydase +      |Oxydase -
|---------------|-----------
|Aeromonas      |
|Bordetella     |
|Branhamella    |
|Brucella       |
|Burkholderia   |
|Campylobacter  |
|Flavobacterium |
|Moraxella      |
|Neisseria      |staph
|Pasteurella    |
|Plesiomonas    |
|Pseudomonas    |
|Vibrio         |

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B:BD[4.438557] → [4.438557:438913]

      ------------ ------------------- ------------------
                   Bas                 Haut
      Shigella     glucose+ (jaune )   lactose- (rouge)
      Pyo          glucose-(rouge)     lactose-
      Salmonelle   noir (H2S)          noir
      E.col        glucose+            glucose+
      ------------ ------------------- ------------------

[4.438557]

[4.438913]

|            |Bas                |Haut
|------------|-------------------|------------------
|Shigella    |glucose+ (jaune )  |lactose- (rouge)
|Pyo         |glucose-(rouge)    |lactose-
|Salmonelle  |noir (H2S)         |noir
|E.col       |glucose+           |glucose+

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-   Gélose Salmonelle-Shigelle : inhibiteur gram+, [lactose]{.underline}

[4.439365]

[4.439439]

-   Gélose Salmonelle-Shigelle : inhibiteur gram+, _lactose_

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B:BD[4.452310] → [4.452310:452598]

    Prélèvement
    -   Naturel : lavage main + toilette, urine 2eme jet
    -   jeune enfant : collecteur d'urine +\*/ cathéter/ponctio
        sus-pubienne
    -   Sonde: jamais dans le sac prélevere, recueiller après
        désinfections sur site dédié. Ne pas envoyer sonde

[4.452310]

[4.452598]

    - Prélèvement
        -   Naturel : lavage main + toilette, urine 2eme jet
        -   jeune enfant : collecteur d'urine +\*/ cathéter/ponctio
            sus-pubienne
        -   Sonde: jamais dans le sac prélevere, recueiller après
            désinfections sur site dédié. Ne pas envoyer sonde
    -  Conservation:
        -   tube stérile 2h à température ambiante, 12h cyto, 24h à 4° pour
            culture
        -   tube borate: 48h si _bien rempli_

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B:BD[4.452599] → [4.452599:452766]

    Conservation:
    -   tube stérile 2h à température ambiante, 12h cyto, 24h à 4° pour
        culture
    -   tube borate: 48h si [bien rempli]{.underline}

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```
[Groupe 1]{.underline} : **Seuil = 10^3^**. Critères majeurs de
```
[4.453114]
[4.453179]
```
_Groupe 1_ : **Seuil = 10^3^**. Critères majeurs de
```

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[Groupe 2]{.underline} = **Seuil = 10^3^ homme, 10^4^ femme**. Plutôt IU

[4.453493]

[4.453567]

_Groupe 2_ = **Seuil = 10^3^ homme, 10^4^ femme**. Plutôt IU

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B:BD[4.453849] → [4.453849:453924]

[Groupe 3]{.underline}: **Seuil 10^5^**. Implication discutée. Nécessite

[4.453849]

[4.453924]

_Groupe 3_: **Seuil 10^5^**. Implication discutée. Nécessite

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```
[Groupe 4]{.underline} : **Seuil: non**. Contaminant
```
[4.454246]
[4.454299]
```
_Groupe 4_ : **Seuil: non**. Contaminant
```

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  Dispositif   Clinique   Leucotyurie   Bactéurie    IU                     Antibiogramme
  ------------ ---------- ------------- ------------ ---------------------- ---------------
  Non          oui        oui           cf seuils    oui                    oui
               non        oui/non       \>= 10^3^    colonisation           non
               oui        non           cf tableau   débutant/neutropénie   oui
  Oui          oui        NC            \>= 10^5^    oui                    oui
               non        NC            \>= 10^3^    colonisation           non

[4.454739]

[4.455324]

|Dispositif |Clinique|Leucotyurie|Bactéurie  |IU                   |Antibiogramme
|-----------|--------|-----------|-----------|---------------------|---------------
|Non        |oui     |oui        |cf seuils  |oui                  |oui
|           |non     |oui/non    |\>= 10^3^  |colonisation         |non
|           |oui     |non        |cf tableau |débutant/neutropénie |oui
|Oui        |oui     |NC         |\>= 10^5^  |oui                  |oui
|           |non     |NC         |\>= 10^3^  |colonisation         |non

Notes: corrected table for zola

Dependencies

In channels

Change contents

File addition: typst.md (----------)

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