Attention, les jobs sont coupés à minuit, donc il faut lancer netxflow depuis un job slurm. Ex: #+begin_src slurm #!/bin/bash -l # Fichier submission.SBATCH #SBATCH --job-name="bisonex-varben" #SBATCH --output=%x.%J.out ## %x=job name, %J=job id #SBATCH --error=%x.%J.out # walltime (hh:mm::ss) max is 8 days #SBATCH -t 24:00:00 #SBATCH --partition=smp #SBATCH -c 1 ## request 16 cores (MAX is 32) #SBATCH --mem=12G ## (MAX is 96G) #SBATCH --mail-user=apraga@chu-besancon.fr #SBATCH --mail-type=END,FAIL # notify when job end/fail module load nix/2.11.0 # Otherwise job fails as it cannot write to $HOME/.nextflow export NXF_HOME=/Work/Users/apraga/.nextflow # user.name must be forced (again... our fix does not seem to work in nix) nextflow -Duser.name=apraga run main.nf -profile standard,helios --input=sanger-varben.csv --genome=GRCh38 -resume 8749b270-ca2c-4f72-82d9-69fff6563c56 #+end_src