* Recherche
** Bisonex
:PROPERTIES:
:CATEGORY: bisonex
:END:
*** Article dependencies (JOSS) :article:deps:
**** STRT Dépendences Sarek [4/9]
***** DONE Package nix Dragmp
***** WAIT PR package nix Dragmap
Relancé <2024-06-29 Sat>
***** TODO Package Deepvariant :deepvariant:nix:
****** Notes
Souci de cache initial qui nous a poussé à passer à python 3.12 (non dispo en 3.11)
Sauf que tensorflow n'est pas supporté (dependence de clu, un nouveau paquet)
Si on veut python3.12, il faut faire fronctionner [[https://github.com/NixOS/nixpkgs/pull/325224/commits/21ce0d2d77a91d757103b691b51c5e932bfede47][ce PR]]
Patch upstream à corriger
On force python 3.11 : ok pour le cache
****** Pre-req.sh :deps:
******* TODO Python
******* WAIT https://github.com/NixOS/nixpkgs/issues/321920
On a changé le hash à la main dans python-jaxlib mais ce n'est pas une bonne solution
******** TODO tensorflow-addons :python:
SCHEDULED: <2024-07-27 Sat>
********* DONE tensorflow-hub (wheel)
CLOSED: [2024-07-14 Sun 21:43]
Bazel pour générer wheel : échoue à télécharger certaines dépendences.
********* DONE Mail Gaetan Lepage pour avis buildBazelPackeg
CLOSED: [2024-07-14 Sun 21:51] SCHEDULED: <2024-07-14 Sun>
********* WAIT tensorflow-hub (bazel -> wheel)
********* TODO tensorflow-model-optimization
********* TODO tf_slim
******** TODO tf-models-official :python:
SCHEDULED: <2024-08-19 Mon>
******* TODO tensorflow: Compléter patch upstream en supprimer tous distutils
SCHEDULED: <2024-08-03 Sat>
******* TODO CUDA
SCHEDULED: <2024-08-19 Mon>
******* TODO Misc
******* TODO Bazel
SCHEDULED: <2024-08-19 Mon>
******* TODO Clif
SCHEDULED: <2024-08-19 Mon>
***** DONE [[file:~/code/nixpkgs/pkgs/by-name/ti/tiddit/package.nix::{][Package nix Tiddit]]
***** WAIT [[https://github.com/NixOS/nixpkgs/pull/312995][PR]] package nix tiddit
Rebase + corrections + relancé <2024-06-29 Sat>
/Créé le/ [2024-05-16 Thu 22:39]
***** DONE Package nix vep
***** WAIT PR Package nix vep
Relancé <2024-06-29 Sat>
***** DONE Package nix multiqc
***** WAIT PR Package nix multiqc
Relancé <2024-06-29 Sat>
**** WAIT Support pour pull partiel :scidataflow:
**** TODO Tests pull partiel :scidataflow:
SCHEDULED: <2024-08-19 Mon>
**** DONE PR pull partiel :scidataflow:
CLOSED: [2024-06-19 Wed 22:02] SCHEDULED: <2024-06-16 Sun>
**** KILL Assets spliceai GRCh38 :scidataflow:
CLOSED: [2024-05-30 Thu 18:55] SCHEDULED: <2024-05-29 Wed>
**** TODO Assets genome T2T :scidataflow:
**** TODO Assets genome indexé T2T :scidataflow:
**** TODO Assets dbsnp T2T :scidataflow:
**** TODO Assets clinvar T2T :scidataflow:
**** WAIT PR assets GRCh38 [[https://github.com/vsbuffalo/scidataflow/issues/21][github]] :scidataflow:
/Entered on/ [2024-06-01 Sat 15:27]
**** DONE Revoir biblio base de données [[id:6f89f301-1b55-43cb-b3be-bf954bbc079e][Base de données pour pipeline constit]]
CLOSED: [2024-06-15 Sat 11:18] SCHEDULED: <2024-06-09 Sun>
/Entered on/ [2024-06-06 Thu 22:59]
**** DONE Compiler sur mésocentre Patch tensorflow distutils
CLOSED: [2024-07-07 Sun 12:21] SCHEDULED: <2024-07-07 Sun>
/Entered on/ [2024-07-07 Sun 10:55]
**** WAIT PR Patch tensorflow distutils
/Entered on/ [2024-07-07 Sun 10:55]
*** Article
**** DONE Bug noodles : parsing Clinvar vcf fails
CLOSED: [2024-06-06 Thu 21:55] SCHEDULED: <2024-06-06 Thu>
/Entered on/ [2024-06-06 Thu 21:55]
Corrigé https://github.com/zaeleus/noodles/issues/241#issuecomment-2152112680
**** DONE Algorithme rapide intersection VCF-BED
CLOSED: [2024-06-09 Sun 23:27] SCHEDULED: <2024-06-08 Sat>
Discussion sur github : pas de réponse
Version actuelle (itération sur les intervalles et on query le VCF): 27s en release :(
Améliorations: https://users.rust-lang.org/t/looking-for-a-fast-lookup-algorithm/99987/2
Not. interval treee avec le crate segment-tree)
**** DONE Comparaison algo naïf avec bedtools intersect: on reste sur bedtools
CLOSED: [2024-06-09 Sun 23:27] SCHEDULED: <2024-06-09 Sun>
/Entered on/ [2024-06-09 Sun 13:49]
*** TODO Candidater prix logiciel libre de la recherche
SCHEDULED: <2025-04-06 Sun>
https://www.ouvriralascience.fr
/Entered on/ [2024-06-06 Thu 23:00]
*** TODO Inscription jcadd 2024
SCHEDULED: <2024-09-02 Mon>
/Entered on/ [2024-07-06 Sat 14:51]
*** TODO Présentation JCADD 2024
SCHEDULED: <2024-09-25 Wed> DEADLINE: <2024-10-30 Wed>
/Entered on/ [2024-07-06 Sat 14:52]
** NF1
:PROPERTIES:
:CATEGORY: nf1
:END:
*** DONE Correction juliette article
CLOSED: [2024-05-26 Sun 21:12] SCHEDULED: <2024-05-21 Tue>
/Entered on/ [2024-05-19 Sun 13:21]
*** DONE Re-soumettre article pediatrics
CLOSED: [2024-06-15 Sat 15:54] DEADLINE: <2024-06-18 Tue>
/Entered on/ [2024-05-19 Sun 13:22]
*** DONE Compte-rendu anapath Dr Mussini via Théo
CLOSED: [2024-06-08 Sat 14:31] SCHEDULED: <2024-06-07 Fri>
/Entered on/ [2024-06-01 Sat 17:24]
Ne répond pas
demande Théo sinon voir avec Michaelo pour onco ped
Mail envoyé :laure:
*** DONE CR anapath Dr Mussini via oncoped : Michaela/secrétariat
CLOSED: [2024-06-12 Wed 21:39] SCHEDULED: <2024-06-10 Mon>
*** DONE Appeler Dr Mussini
CLOSED: [2024-06-12 Wed 21:39] SCHEDULED: <2024-06-13 Thu>
/Entered on/ [2024-06-08 Sat 14:32]
*** DONE Corrections Dr Mussini
CLOSED: [2024-06-12 Wed 21:39] SCHEDULED: <2024-06-12 Wed>
*** DONE Envoyer autorisation de changer d'auteur signée
CLOSED: [2024-06-27 Thu 22:14] SCHEDULED: <2024-06-27 Thu>
/Entered on/ [2024-06-27 Thu 22:14]
* Japonais
:PROPERTIES:
:CATEGORY: japonais
:END:
** TODO Intermediate Japanese
# SCHEDULED: <2024-08-09 Fri +1d>
:PROPERTIES:
:STYLE: habit
:LAST_REPEAT: [2024-06-30 Sun 15:43]
:END:
+ State "DONE" from "TODO" <2024-08-08 Thu 10:01>
+ State "DONE" from "TODO" <2024-08-07 Wed 10:01>
+ State "DONE" from "TODO" <2024-08-06 Tue 10:01>
+ State "DONE" from "TODO" <2024-08-05 Mon 10:01>
+ State "DONE" from "TODO" <2024-08-04 Sun 10:01>
+ State "DONE" from "TODO" <2024-08-03 Sat 10:01>
+ State "DONE" from "TODO" <2024-08-02 Fri 10:01>
+ State "DONE" from "TODO" <2024-08-01 Thu 10:01>
+ State "DONE" from "TODO" <2024-07-31 Wed 10:01>
+ State "DONE" from "TODO" <2024-07-29 Mon 10:01>
+ State "DONE" from "TODO" <2024-07-29 Mon 10:01>
+ State "DONE" from "TODO" <2024-07-27 Sat 10:01>
+ State "DONE" from "TODO" <2024-07-26 Fri 10:01>
+ State "DONE" from "TODO" <2024-07-25 Thu 10:01>
+ State "DONE" from "TODO" <2024-07-24 Wed 10:01>
+ State "DONE" from "TODO" <2024-07-23 Tue 10:01>
+ State "DONE" from "TODO" <2024-07-22 Mon 10:01>
+ State "DONE" from "TODO" <2024-07-21 Sun 10:01>
+ State "DONE" from "TODO" <2024-07-20 Sat 10:01>
+ State "DONE" from "TODO" <2024-07-19 Fri 10:01>
+ State "DONE" from "TODO" <2024-07-18 Thu 10:01>
+ State "DONE" from "TODO" <2024-07-17 Wed 10:01>
+ State "DONE" from "TODO" <2024-07-16 Tue 10:01>
+ State "DONE" from "TODO" <2024-07-15 Mon 10:01>
+ State "DONE" from "TODO" <2024-07-14 Sun 10:01>
+ State "DONE" from "TODO" <2024-07-13 Sat 10:01>
+ State "DONE" from "TODO" <2024-07-12 Fri 10:01>
+ State "DONE" from "TODO" <2024-07-11 Thu 10:01>
+ State "DONE" from "TODO" <2024-07-10 Wed 10:01>
+ State "DONE" from "TODO" <2024-07-08 Mon 10:01>
+ State "DONE" from "TODO" <2024-07-07 Sun 10:01>
+ State "DONE" from "TODO" <2024-07-06 Sat 10:01>
+ State "DONE" from "TODO" <2024-07-05 Fri 10:01>
+ State "DONE" from "TODO" <2024-07-04 Thu 10:01>
+ State "DONE" from "TODO" <2024-07-03 Wed 10:01>
+ State "DONE" from "TODO" <2024-07-02 Tue 10:01>
+ State "DONE" from "TODO" <2024-07-01 Mon 10:01>
+ State "DONE" from "TODO" <2024-06-30 Sun 10:01>
+ State "DONE" from "TODO" <2024-06-29 Sat 10:01>
+ State "DONE" from "TODO" <2024-06-27 Thu 10:01>
+ State "DONE" from "TODO" <2024-06-26 Wed 10:01>
+ State "DONE" from "TODO" <2024-06-25 Tue 10:01>
+ State "DONE" from "TODO" <2024-06-24 Mon 10:01>
+ State "DONE" from "TODO" <2024-06-20 Thu 10:01>
+ State "DONE" from "TODO" <2024-06-19 Wed 10:01>
+ State "DONE" from "TODO" <2024-06-18 Tue 10:01>
+ State "DONE" from "TODO" <2024-06-17 Mon 10:01>
+ State "DONE" from "TODO" <2024-06-16 Sun 10:01>
+ State "DONE" from "TODO" <2024-06-15 Sat 10:01>
+ State "DONE" from "TODO" <2024-06-14 Fri 10:01>
+ State "DONE" from "TODO" <2024-06-13 Thu 10:01>
+ State "DONE" from "TODO" <2024-06-12 Wed 10:01>
+ State "DONE" from "TODO" <2024-06-11 Tue 10:01>
+ State "DONE" from "TODO" <2024-06-10 Mon 10:01>
+ State "DONE" from "TODO" <2024-06-09 Sun 10:01>
+ State "DONE" from "TODO" <2024-06-08 Sat 10:01>
+ State "DONE" from "TODO" <2024-06-07 Fri 10:01>
+ State "DONE" from "TODO" <2024-06-06 Thu 10:01>
+ State "DONE" from "TODO" <2024-06-05 Wed 10:01>
+ State "DONE" from "TODO" <2024-06-04 Tue 10:01>
+ State "DONE" from "TODO" <2024-06-02 Sun 10:01>
+ State "DONE" from "TODO" <2024-06-01 Sat 10:01>
+ State "DONE" from "TODO" <2024-05-31 Fri 10:01>
+ State "DONE" from "TODO" <2024-05-30 Thu 10:01>
+ State "DONE" from "TODO" <2024-05-29 Wed 10:01>
+ State "DONE" from "TODO" <2024-05-28 Tue 10:01>
+ State "DONE" from "TODO" <2024-05-26 Sun 10:01>
+ State "DONE" from "TODO" <2024-05-25 Sat 14:47>
+ State "DONE" from "TODO" <2024-05-24 Fri 14:47>
+ State "DONE" from "TODO" <2024-05-22 Wed 14:47>
+ State "DONE" from "TODO" <2024-05-21 Tue 14:47>
+ State "DONE" from "TODO" <2024-05-20 Mon 14:47>
+ State "DONE" from "TODO" <2024-05-19 Sun 14:47>
+ State "DONE" from "TODO" <2024-05-18 Sat 14:47>
+ State "DONE" from "TODO" <2024-05-17 Fri 14:47>
+ State "DONE" from "TODO" <2024-05-16 Thu 14:47>
+ State "DONE" from "TODO" <2024-05-15 Wed 14:47>
** DONE Payer leçon aya <2024-05-19 Sun>
/Entered on/ [2024-05-19 Sun 23:02]
** DONE Notes japonais
CLOSED: [2024-06-30 Sun 17:17] SCHEDULED: <2024-06-30 Sun>
/Entered on/ [2024-06-30 Sun 12:57]
** DONE Notes japonais :gentoo:
CLOSED: [2024-06-30 Sun 23:47] SCHEDULED: <2024-06-30 Sun>
/Entered on/ [2024-06-30 Sun 12:57]
** DONE Notes Aya <2024-07-21 Sun>
CLOSED: [2024-08-03 Sat 12:03] SCHEDULED: <2024-07-22 Mon>
/Entered on/ [2024-07-22 Mon 22:30]
** TODO Tadoku
SCHEDULED: <2024-08-07 Wed +1d>
:PROPERTIES:
:LAST_REPEAT: [2024-08-16 Fri 22:49]
:END:
- State "DONE" from "TODO" [2024-08-16 Fri 22:49]
- State "DONE" from "TODO" [2024-08-12 Mon 23:56]
- State "DONE" from "TODO" [2024-08-03 Sat 23:25]
- State "DONE" from "TODO" [2024-08-02 Fri 22:30]
- State "DONE" from "TODO" [2024-08-01 Thu 22:30]
/Entered on/ [2024-08-02 Fri 22:28]
** TODO Notes Aya
SCHEDULED: <2024-08-11 Sun>
/Entered on/ [2024-08-11 Sun 23:06]
* Voiture
:PROPERTIES:
:CATEGORY: voiture
:END:
** DONE Envoyer export facture contre-visite Mazda5
CLOSED: [2024-05-28 Tue 19:45] SCHEDULED: <2024-05-28 Tue>
/Créé le/ [2024-05-16 Thu 22:32]
- Rien dans les photos
- Pas dans les papiers Allondaz
- Attente facture renvoyée par courrier
recu, transmis expert<2024-05-28 Tue>
** DONE Suspendre assurance moto
CLOSED: [2024-06-08 Sat 18:39]
/Entered on/ [2024-06-03 Mon 22:44]
** DONE Envoyer dossier expert (remboursement Mazda)
CLOSED: [2024-06-14 Fri 22:53] SCHEDULED: <2024-06-11 Tue>
/Entered on/ [2024-06-12 Wed 23:01]
* Internat
:PROPERTIES:
:CATEGORY: internat
:END:
** DONE Convertir notes hémato org-mode
SCHEDULED: <2024-05-17 Fri>
** DONE Contacter DAM pour changement d'adresse
SCHEDULED: <2024-05-19 Sun>
/Entered on/ [2024-05-19 Sun 13:56]
** TODO Convertir notes bactério org-mode
/Entered on/ [2024-05-19 Sun 13:29]
** TODO Converter notes biochimie org-mode
/Entered on/ [2024-05-19 Sun 13:29]
** Interchu
:PROPERTIES:
:CATEGORY: interchu
:END:
*** DONE Mail Quentin pour vérifier stage Biomnis possible en docteur junior
CLOSED: [2024-05-28 Tue 19:51] SCHEDULED: <2024-05-28 Tue>
/Entered on/ [2024-05-27 Mon 23:47]
*** DONE Mail biomnis Laure Raymond via Louis Januel
CLOSED: [2024-06-06 Thu 20:57] SCHEDULED: <2024-06-06 Thu>
/Entered on/ [2024-05-27 Mon 23:48]
Ok pour interchu en docteur junior ?
*** DONE Relancer Quentin pour interchu Biomnis
CLOSED: [2024-06-05 Wed 22:23]
/Entered on/ [2024-06-03 Mon 22:45]
Ne répond pas mais Oriane dit OK
*** WAIT Monter dossier interCHU Biomnis
SCHEDULED: <2024-07-27 Sat>
/Entered on/ [2024-06-12 Wed 23:02]
** DONE Fusionner notes hémato + biochimie en attente
CLOSED: [2024-06-29 Sat 14:53] SCHEDULED: <2024-06-27 Thu>
/Entered on/ [2024-06-27 Thu 22:14]
** DONE Fusionner biblio projet Facebook et pseudogene
CLOSED: [2024-07-13 Sat 11:36] SCHEDULED: <2024-07-13 Sat>
/Entered on/ [2024-07-13 Sat 10:28]
** DONE Se connecter à updtodate depuis CHU Grenoble
CLOSED: [2024-07-29 Mon 22:11] SCHEDULED: <2024-07-28 Sun>
/Entered on/ [2024-07-18 Thu 22:33]
** TODO ETU https://formation.uness.fr/3C/course/view.php?id=7086
SCHEDULED: <2024-11-08 Fri>
Entered on [2024-08-08 Thu 22:29]
* Maison
:PROPERTIES:
:CATEGORY: maison
:END:
** TODO Contacter RED pour changer adresse sur facture
SCHEDULED: <2024-08-17 Sat>
/Entered on/ [2024-05-19 Sun 13:56]
** DONE Payer loyer grenoble
CLOSED: [2024-06-12 Wed 21:39] SCHEDULED: <2024-06-05 Wed>
/Entered on/ [2024-06-03 Mon 22:52]
* Divers
:PROPERTIES:
:CATEGORY: divers
:END:
** DONE [[https://github.com/nushell/nushell.github.io/pull/1446][PR]] doc nushell query
CLOSED: [2024-06-16 Sun 00:55]
/Entered on/ [2024-06-14 Fri 22:54]
** WAIT Remboursement Allianz Montbéliard -> Grenoble 2024/0523168
/Créé le/ [2024-05-16 Thu 22:44]
2024-03-01
Vont mettre ça ne priorité, appel<2024-07-16 Tue>
** DONE Justificatif de domicile Caisse Épargne Metz
CLOSED: [2024-06-29 Sat 13:36] SCHEDULED: <2024-07-03 Wed>
/Créé le/ [2024-05-17 Fri 21:32]
** DONE Nettoyer bookmarks buku
CLOSED: [2024-06-29 Sat 13:59]
/Entered on/ [2024-06-08 Sat 18:39]
** DONE Inscription liste électorale (Besançon ? Allondaz)
CLOSED: [2024-06-29 Sat 13:28] SCHEDULED: <2024-06-29 Sat>
/Entered on/ [2024-06-29 Sat 12:57]
Envoyé, en attente
** DONE Mise à jour avec GRCh9.6 :gentoo:
CLOSED: [2024-07-06 Sat 10:17] SCHEDULED: <2024-06-30 Sun>
/Entered on/ [2024-06-30 Sun 12:57]
emerge -1u haskell-updater && haskell-updater --world -- -N --with-bdeps=y && emerge --depclean && haskell-updater -- @preserved-rebuild
Tenir holoheap au courant
** DONE Mise à jour :gentoo:
CLOSED: [2024-06-30 Sun 14:28] SCHEDULED: <2024-06-30 Sun>
/Entered on/ [2024-06-30 Sun 12:57]
** DONE Mettre en place prélèvement loyer
CLOSED: [2024-08-02 Fri 22:26] SCHEDULED: <2024-07-30 Tue>
/Entered on/ [2024-07-02 Tue 22:54]
** TODO Modus themes nushell
SCHEDULED: <2024-08-17 Sat>
/Entered on/ [2024-07-27 Sat 10:17]
* Scrap
** DONE Aerial spincity
CLOSED: [2024-05-26 Sun 00:14] SCHEDULED: <2024-05-25 Sat>
/Entered on/ [2024-05-20 Mon 21:13]
*** DONE Corriger url pour additional content
CLOSED: [2024-05-26 Sun 17:30] SCHEDULED: <2024-05-26 Sun>
/Entered on/ [2024-05-26 Sun 10:25]
*** DONE Corriger audio manquant/erreur 403
CLOSED: [2024-05-26 Sun 21:12] SCHEDULED: <2024-05-26 Sun>
* Nix
:PROPERTIES:
:CATEGORY: nix
:END:
** WAIT Review PR gitftless 154351
/Entered on/ [2024-05-20 Mon 00:08]
** HOLD tester rapidement gradle2nix v2 pour gatk
/Entered on/ [2024-06-30 Sun 09:52]
** DONE Gatk 4.6.0.0
CLOSED: [2024-06-30 Sun 17:17] SCHEDULED: <2024-06-30 Sun>
/Entered on/ [2024-06-30 Sun 09:52]
* Gentoo
:PROPERTIES:
:CATEGORY: gentoo
:END:
** WAIT Mise à jour Julia 1.10.4
/Entered on/ [2024-06-05 Wed 22:10]
On essaie sans les patches
"System library symlink failure: Unable to locate libopenlibm.so on your system!" -> ok en installant les dépendences à la main
* Histoire
:PROPERTIES:
:CATEGORY: histoire
:END:
** DONE Notes définition fascisme [[https://www.reddit.com/r/AskHistorians/comments/e57h4n/what_is_fascism/][/r/askhistorians]]
CLOSED: [2024-06-19 Wed 22:55] SCHEDULED: <2024-05-25 Sat>
/Entered on/ [2024-05-25 Sat 11:42]
* Santé
:PROPERTIES:
:CATEGORY: santé
:END:
** DONE Demander carte de mutuelle
CLOSED: [2024-06-05 Wed 22:08] SCHEDULED: <2024-06-05 Wed>
/Entered on/ [2024-06-05 Wed 22:07]
Sera envoyée par courrier (adresse à mise à jour)
Doit envoyer un code pour accès second espace personnel
** KILL Envoyer remboursement podologue mutuelle
CLOSED: [2024-07-18 Thu 22:32] SCHEDULED: <2024-07-15 Mon>
/Entered on/ [2024-07-02 Tue 22:54]