apraga/org - Change JR3UB52XAKHPCXIWLRJ3AH7YYX5I7A4OFOZILHAFTCOAJ5L4MWHQC

Notes for snakemake

Created by Alexis Praga on August 23, 2022

JR3UB52XAKHPCXIWLRJ3AH7YYX5I7A4OFOZILHAFTCOAJ5L4MWHQC

Dependencies

In channels

main

Change contents

Replacement in projects.org at line 1637 [4.123895]
∅:D[2.1499] → [3.145:182]
B:BD[5.136] → [3.145:182]
```
*** TODO Essayer d’autres pipeline
```
[2.1499]
[2.1500]
```
*** TODO Implémenter d’autres pipeline
```
Replacement in projects.org at line 1639 [4.123895]
∅:D[2.1585] → [3.182:192]
B:BD[3.182] → [3.182:192]
```
**** GATK
```
[2.1585]
[5.216]
```
**** TODO GATK
```

Insertion in projects.org at line 1641 [4.123895]

[5.314]

[6.11224]

A priori, respecte les bonnes pratiques
**** DONE Essayer snamke avec bonne pratiques
https://github.com/snakemake-workflows/dna-seq-gatk-variant-calling/blob/main/.github/workflows/main.yml
Installer Mamba (micromamba ne fonctionne pas sous nix)
Ne fonctionne pas sous WSL2... MultiQC n’est pas assez à jour
Problèmes de versions...